PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g654880.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 511aa MW: 55853.4 Da PI: 6.1294

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g654880.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	88.9	5.1e-28	395	449	47	101
NF-YC 47 lskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 l++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivpr++l Pd.00g654880.m01 395 LTRACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 449 689*************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MAAVTLLALG NGAPDVFASV AAVRTGQYRT GFGAILSAGT FVSAFVVGFV AIYAAPFSLN 60 PAPFVRDVLF YLTAALFLFY VYLSAEIYLW QAVGFVGFYL FFVGLVFWMD LGLGAGGKKS 120 RVEEGVVGDS EIQRGLVAPD FEIGQVSENS EDGKPSFGFR RALVMISKAW ELPVSVLLKL 180 TIPQAAPSEW SRFYTSANIA LCPLALLYAC NSFMPFNHPV VFLLSDTHLP LWFVVLLASS 240 PLALLHYIVE KDPPKTEQMP VLLIAFVMSV FWISTTAGEL LNCLAALGSL LELPPALLGL 300 TVLAWGNSVG DLVADVALAK AGHPAMAMAG CFAGPMFNML VGLGTALVIQ TYNVYPEVYE 360 LQFHVEHHLF EKRAKLLWIH KGITNPNLWG CIKKLTRACE MFILELTLRS WNHTEENKRR 420 TLQKNDIAAA ITRTDIFDFL VDIVPREDLK DEVLASIPRG TVSVGGPADA LPYCYMPPQH 480 APQVGAPGMI MGKPMMDPSM YAQQSHPYMG L

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MAAVTLLALG NGAPDVFASV AAVRTGQYRT GFGAILSAGT FVSAFVVGFV AIYAAPFSLN  60
PAPFVRDVLF YLTAALFLFY VYLSAEIYLW QAVGFVGFYL FFVGLVFWMD LGLGAGGKKS  120
RVEEGVVGDS EIQRGLVAPD FEIGQVSENS EDGKPSFGFR RALVMISKAW ELPVSVLLKL  180
TIPQAAPSEW SRFYTSANIA LCPLALLYAC NSFMPFNHPV VFLLSDTHLP LWFVVLLASS  240
PLALLHYIVE KDPPKTEQMP VLLIAFVMSV FWISTTAGEL LNCLAALGSL LELPPALLGL  300
TVLAWGNSVG DLVADVALAK AGHPAMAMAG CFAGPMFNML VGLGTALVIQ TYNVYPEVYE  360
LQFHVEHHLF EKRAKLLWIH KGITNPNLWG CIKKLTRACE MFILELTLRS WNHTEENKRR  420
TLQKNDIAAA ITRTDIFDFL VDIVPREDLK DEVLASIPRG TVSVGGPADA LPYCYMPPQH  480
APQVGAPGMI MGKPMMDPSM YAQQSHPYMG L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	425	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	4e-46	NF-YC family protein