PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g649230.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 415aa MW: 46751.4 Da PI: 7.1444

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g649230.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.5	4.3e-29	193	277	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev+aLi +r+ +e+++++ k++ Weevs+ m + g++rs+k+Ck+kwen+nk+++k+k+++kkr + + +tc+yf+ql+ Pd.00g649230.m01 193 RWPQSEVKALILVRSGIESKFQEPGVKGHVWEEVSALMGSMGYQRSAKRCKQKWENINKYFRKTKDSAKKR-PHNFKTCSYFNQLD 277 8*******************************************************************8.88889******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGEANQTGSG SALTGENSPK NVDLPVPFCD PHDLNVAPTA QVRVDDGSEA SIGEESSPRK 60 IQKRKRKRTM KKQLSSVISF FESLVTQVMD HQENLHKKYL EVIERTDKER REREAAWRNQ 120 EAENHKREAI AKVHEQALAS SREALIVSYI EKITGQRVNL PSRQAPLLLQ PDNLNEPPVE 180 ELTPFKIDHT NSRWPQSEVK ALILVRSGIE SKFQEPGVKG HVWEEVSALM GSMGYQRSAK 240 RCKQKWENIN KYFRKTKDSA KKRPHNFKTC SYFNQLDQLY SGTPITAPSS SSSYYSSNPS 300 ASMDDNIPKQ GFSDLLEAFV AGREAGVAHN LSSGNFEISE MGSNRLDFDG IIGERDHQTE 360 LESFHPLTCN NCNRIPAPDI IVSQNDLSFS LQLVIGARAI EIPSNLNDHL FYQNR

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGEANQTGSG SALTGENSPK NVDLPVPFCD PHDLNVAPTA QVRVDDGSEA SIGEESSPRK  60
IQKRKRKRTM KKQLSSVISF FESLVTQVMD HQENLHKKYL EVIERTDKER REREAAWRNQ  120
EAENHKREAI AKVHEQALAS SREALIVSYI EKITGQRVNL PSRQAPLLLQ PDNLNEPPVE  180
ELTPFKIDHT NSRWPQSEVK ALILVRSGIE SKFQEPGVKG HVWEEVSALM GSMGYQRSAK  240
RCKQKWENIN KYFRKTKDSA KKRPHNFKTC SYFNQLDQLY SGTPITAPSS SSSYYSSNPS  300
ASMDDNIPKQ GFSDLLEAFV AGREAGVAHN LSSGNFEISE MGSNRLDFDG IIGERDHQTE  360
LESFHPLTCN NCNRIPAPDI IVSQNDLSFS LQLVIGARAI EIPSNLNDHL FYQNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	73	RKIQKRKRKRTMKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-47	Trihelix family protein