PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g648600.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 347aa MW: 38437.9 Da PI: 5.6449

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g648600.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.2	2e-09	4	36	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC +C +++H Pd.00g648600.m01 4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAA 36 58*****************************55 PP
2	zf-B_box	27.9	4.8e-09	46	91	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC +C +H+ H++vp+ Pd.00g648600.m01 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplsrrHERVPV 91 679*****************************66899999999986 PP
3	CCT	69.8	6.7e-24	286	329	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Pd.00g648600.m01 286 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 329 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT 60 CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSANS AANSAANSAP VVKSVVNFLD 120 DRYFSDVDGQ DAETEVSREE AEAASWLLPN PKAMENPDLN SGEYFLPEMD PYLDLDYGHV 180 DPKLEDAQEQ NSCGTDGVVP VQSKSVQPQL VNDHSFEIDF SAASKPYVYG FHAQCLSQSV 240 SSSSMDVSVV PDGNTTMTDV CDPYTKSMSS AVESTHQAVQ ISSADREARV LRYREKRKNR 300 KFEKTIRYAS RKAYAETRPR IKGRFAKRTE VEIEAERLCR YGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSANS AANSAANSAP VVKSVVNFLD  120
DRYFSDVDGQ DAETEVSREE AEAASWLLPN PKAMENPDLN SGEYFLPEMD PYLDLDYGHV  180
DPKLEDAQEQ NSCGTDGVVP VQSKSVQPQL VNDHSFEIDF SAASKPYVYG FHAQCLSQSV  240
SSSSMDVSVV PDGNTTMTDV CDPYTKSMSS AVESTHQAVQ ISSADREARV LRYREKRKNR  300
KFEKTIRYAS RKAYAETRPR IKGRFAKRTE VEIEAERLCR YGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-129	CO-like family protein