PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g640470.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 187aa    MW: 20675.7 Da    PI: 10.2206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g640470.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.7e-211053245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       ++++s rqvtfskRr+g++KKA+EL +LC+ae+ +i+fs+ gk
  Pd.00g640470.m01 10 MVKDSSSRQVTFSKRRTGLFKKANELATLCGAEIGLIVFSPGGK 53
                      6799*************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MGRRKIEMKM VKDSSSRQVT FSKRRTGLFK KANELATLCG AEIGLIVFSP GGKPFSFGHP  60
NVESIADRFL NQEGSKSKAG SSNSKNDETV ERLSQQLDDL NKKLEAEKKR GHMLDKAILK  120
AKGLPLKSKA PNVRELSQAD LQKMKESLEQ LREKVKARAC EMEASSSLLL LANEPDVETD  180
GTVAKNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-42M-type_MADS family protein