PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g632600.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 691aa MW: 78204.4 Da PI: 5.1567 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359.8 | 3.9e-110 | 327 | 689 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL++cA+av+s d + a++ L ++++++sp+gd +qRla+y++++L+ rla l+p e++ ++ l a++++ ++P+ k+s+ Pd.00g632600.m01 327 TLLTQCAQAVASYDIRTANEQLRQIRQHSSPYGDGTQRLAHYLANGLELRLAA-----GVPLNP----EMSAADLLRAYQTYITACPFQKMSN 410 69**************************************************9.....222333....34579******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + aN++I + +e+++r+HiiDf++ +G QWp+L+q L++R +gpp+lRiTgv+ p++g +e++e+tg+rLa+++++++vpfe+nv +ak++ Pd.00g632600.m01 411 FYANRTIAKLAEKATRLHIIDFGVLYGYQWPCLIQGLSNRHGGPPTLRITGVEFPQPGfrPSERVEATGRRLANYCKRFKVPFEYNV-IAKNW 502 *********************************************************9****************************9.7**** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 e++++e+++++++E ++Vn+ ++l++l+de+v+ + rd+vLkl+++++P+++++ + ++n++ F +rf eal+++s+lfd++e++lpre+ Pd.00g632600.m01 503 ETIQYEDIKIDRDELIVVNCLYRLKNLPDETVTDSP-RDTVLKLIRRINPDIFIHGVVNGSYNAPFFDTRFREALYHFSSLFDMFEETLPRED 594 ****************************99888777.******************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 ++r E+e+ gr++ nv+aceg++r+er et+++W+ r ++aGF+++pl++++ k+++ ++ + + + v+e+ ++++gWk+r + ++S Pd.00g632600.m01 595 QQRLLFEKEVYGRDVINVIACEGSRRFERPETYKQWQFRNKRAGFRQLPLDQEILKKVRNMVTSEYHKDFVVDEDGMWVLQGWKGRIIHAISY 687 **************************************************************9999888************************ PP GRAS 373 Wr 374 W+ Pd.00g632600.m01 688 WK 689 *8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence |
MDTFLDEIPS SMNKFIFDQG SVPAYSNQNI GTGFEADHDF TDPSFFLVNP DPSSDFSSLS 60 GFSSEVDSPD SQSSNAILKY ISEMLMEEEL ENKPCMLQDC LALQAAEKSL HDVLVQDYPS 120 SANSLLTSVY QNVENPDEGS NHSSNGSVAA SNWVGSDWDC VQDVFQSSRI QISATESPAY 180 TLSVPNPLLS NGQGEIIAVE SSSSFPIEPK ELAKDVSFNS VQDGSSSPRG SRSKKNRQRE 240 DGDDLDEGRS NKQSAVYADE SELPELFDKV LLCQGEKQES QSCSPQESEH KEGSGKLQLN 300 RKSRGSKGKK TRKKKPDDNT GGVDLWTLLT QCAQAVASYD IRTANEQLRQ IRQHSSPYGD 360 GTQRLAHYLA NGLELRLAAG VPLNPEMSAA DLLRAYQTYI TACPFQKMSN FYANRTIAKL 420 AEKATRLHII DFGVLYGYQW PCLIQGLSNR HGGPPTLRIT GVEFPQPGFR PSERVEATGR 480 RLANYCKRFK VPFEYNVIAK NWETIQYEDI KIDRDELIVV NCLYRLKNLP DETVTDSPRD 540 TVLKLIRRIN PDIFIHGVVN GSYNAPFFDT RFREALYHFS SLFDMFEETL PREDQQRLLF 600 EKEVYGRDVI NVIACEGSRR FERPETYKQW QFRNKRAGFR QLPLDQEILK KVRNMVTSEY 660 HKDFVVDEDG MWVLQGWKGR IIHAISYWKP V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 301 | 316 | RKSRGSKGKKTRKKKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-177 | GRAS family protein |