PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g629980.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26299 Da    PI: 10.1027
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g629980.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.5e-271059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s
  Pd.00g629980.m01 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59
                      8***********************************************86 PP
2K-box86.94.1e-2981169997
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       + +++ + +q+e+a L+++++nLq+++R+++Ge+L+ Ls+k+Lq+Le+qLe s++ +R+kK++ll+++i+el +k + +++en +L kk
  Pd.00g629980.m01  81 NPTSEIKLWQREAAMLRQQLQNLQENHRQMMGEELSGLSVKDLQNLENQLEMSIRGVRTKKDQLLMDEIQELNRKGNLIHQENVELYKK 169
                       56788999*****************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFAST  60
SIKSVIERYN KAKEEHHQFG NPTSEIKLWQ REAAMLRQQL QNLQENHRQM MGEELSGLSV  120
KDLQNLENQL EMSIRGVRTK KDQLLMDEIQ ELNRKGNLIH QENVELYKKK SFTSQVYGTR  180
DVNGANRNPL LINGLGIGED SHGPVQLQLS QPQQQNCETT ARATKLGLQL H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.19e-98MIKC_MADS family protein