PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g628530.m03
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 456aa    MW: 51530.3 Da    PI: 8.3489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g628530.m03genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06731127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      +kt+lC  ++r G C + ++C+FaHg+
  Pd.00g628530.m03  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                      69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGFNITVHY YVTHVIPCNG  60
RRDSGGDDLR DKLERRYSPR RRYSPERDAR GRHVLRAEYS PSRSLERENF EYSFGNSKRR  120
KKQHLDGQSD ISGSLRISNE TEHEAKETNS RGVLEEQLKQ LQSEINMLDH CRSQLGVYLE  180
EKSQEVDSLT SKIKELEAQL YKEKEDCKRI SSKVKKFVKA HSRNSRIQDQ LKRSQVRLNK  240
LGDQLALDIY GNDVNEEDSS INIVSDGDGE TTGFPVTPHN ERLNDASPSK IRLEAIRDNA  300
KESKQSAHST RGHLTTSSRP KKLSRWNIHP AQSNFDKKNE AVSNAIGSPK QLANEGKHDR  360
RKTASSSILS ADMLKISESA PVVPSTSMAA HPVDTEVEIE PEDKIEMVGK ASGKIEEGAA  420
YENVSFSLPL PPPPIPKNNY SQYEGDDEII DVQGAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.19e-43C3H family protein