PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g625780.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 457aa MW: 51128.4 Da PI: 7.2344 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 374.9 | 1.1e-114 | 95 | 454 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lLl+cAe+v+ ++l +a+ lL ++ el+sp g++ +R+ ayf+ AL++r+ +s+ ++y+ l++++ + +s++ ++al+ ++ +sP++kfsh Pd.00g625780.m01 95 GLLLQCAECVAMDSLDEASDLLPEIAELSSPFGSSPERVGAYFAHALQTRVISSCLGTYSPLTTKTLTLAQSQRIFNALQSYNSISPLVKFSH 187 58******************************************************************99*********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +t NqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++ s+RiTg+gs s+e le+tg+rLa+fA++lg+pfef++l k + Pd.00g625780.m01 188 FTSNQAIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFRPLEGKIGSI 276 ******************************************************....9**************************98888899 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 el++L v+p+Ea++V++++ h l+d ++s +L+l+ sl+Pk+++++eq+++h s+sFl rf+eal+yysalfd+l +l+++s e Pd.00g625780.m01 277 TELSQLGVRPDEATVVHWMH--HCLYDVTGSDLA----TLRLLGSLRPKLITIAEQDLSH-SGSFLGRFVEALHYYSALFDALGDGLGADSLE 362 9******************9..888877777777....**********************.899***************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r++vE++l+g ei+n++a g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+ Pd.00g625780.m01 363 RHMVEQQLFGCEIRNILAVGGPKRTGEVK-VERWGDELKRVGFRPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 454 ***********************998887.9*************************************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence |
MVHHRFLSSI ILIDIRYAAD FTRYFSFLDE ARGFAYRPLI FLHEDQTRRP RPRRRRIIRR 60 RPLLHNRNFS REKTSDERET EPVAEGESAG LRLLGLLLQC AECVAMDSLD EASDLLPEIA 120 ELSSPFGSSP ERVGAYFAHA LQTRVISSCL GTYSPLTTKT LTLAQSQRIF NALQSYNSIS 180 PLVKFSHFTS NQAIFQALDG EDHVHVIDLD IMQGLQWPGL FHILASRSKK IRSMRITGFG 240 SSSELLESTG RRLADFASSL GLPFEFRPLE GKIGSITELS QLGVRPDEAT VVHWMHHCLY 300 DVTGSDLATL RLLGSLRPKL ITIAEQDLSH SGSFLGRFVE ALHYYSALFD ALGDGLGADS 360 LERHMVEQQL FGCEIRNILA VGGPKRTGEV KVERWGDELK RVGFRPVSLG GNPAAQASLL 420 LGMFPWKGYT LVEENGCLKL GWKDLSLLTA SAWQPLD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 0.0 | GRAS family protein |