PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g620130.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 479aa MW: 53940.1 Da PI: 6.1212

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g620130.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.5e-14	26	70	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEd++l + + +G+++W+ Ia+++ +t qc+ rw++yl Pd.00g620130.m01 26 TWSQEEDDILRNQISVHGTDNWAIIASKFK-DKTTRQCRRRWYTYL 70 6**************************9.***********97 PP
2	Myb_DNA-binding	43.6	6.7e-14	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + Pd.00g620130.m01 76 KGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 119 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MPQEEPRKKL GNEYSNSKKK ERHIVTWSQE EDDILRNQIS VHGTDNWAII ASKFKDKTTR 60 QCRRRWYTYL NSDFKKGGWS PEEDMLLCEA QKIFGNRWTE IAKVVSGRTD NAVKNRFSTL 120 CKKRAKYEAL AKENATSYIN SNDKRVIIQN GFDTDGTTAP SKKMRRTHIP NLSENCNSGD 180 RLFEQCGKMN QQLRAPFTVL IQNFHNVDNL PDQHNVSSTK EVPGNAQNSK FQGSFLKKDD 240 PKITALMQQA ELLSSLALKV NTENTDQSLE NAWKVLQDFL NQSKESDILS YGITDFDFQL 300 EDLKYLLEDL RSTNEGSRPS WQQPDLYDAS PGSSEYSTGS TLLSQTECYV EQNEAEIGTL 360 IEEIQPGSQS IPIGGENDVR ECEKGIVSSG TRKQEIFPSC NEGTKTDAVI SVSSNTEFSS 420 PNQVTPLFRS LAAGIPSPKF SESERSFLLK TLGVESPSPY PSNNPSRPPP CKRALLQSL

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MPQEEPRKKL GNEYSNSKKK ERHIVTWSQE EDDILRNQIS VHGTDNWAII ASKFKDKTTR  60
QCRRRWYTYL NSDFKKGGWS PEEDMLLCEA QKIFGNRWTE IAKVVSGRTD NAVKNRFSTL  120
CKKRAKYEAL AKENATSYIN SNDKRVIIQN GFDTDGTTAP SKKMRRTHIP NLSENCNSGD  180
RLFEQCGKMN QQLRAPFTVL IQNFHNVDNL PDQHNVSSTK EVPGNAQNSK FQGSFLKKDD  240
PKITALMQQA ELLSSLALKV NTENTDQSLE NAWKVLQDFL NQSKESDILS YGITDFDFQL  300
EDLKYLLEDL RSTNEGSRPS WQQPDLYDAS PGSSEYSTGS TLLSQTECYV EQNEAEIGTL  360
IEEIQPGSQS IPIGGENDVR ECEKGIVSSG TRKQEIFPSC NEGTKTDAVI SVSSNTEFSS  420
PNQVTPLFRS LAAGIPSPKF SESERSFLLK TLGVESPSPY PSNNPSRPPP CKRALLQSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-174	MYB family protein