PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g613970.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 917aa MW: 100937 Da PI: 4.8985

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g613970.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	1e-05	532	553	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Cr+f r G C+ Gd+CkF+H+ Pd.00g613970.m01 532 AYCRHFVR-GRCHEGDKCKFSHD 553 67****.***********7 PP
2	zf-CCCH	24.6	4.3e-08	587	607	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f ++G+C++GdrC F+H Pd.00g613970.m01 587 PCNNFKENGFCSRGDRCMFSH 607 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence
MEEANIETEK PPQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQLSAA DQNVPQELNQ 60 DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL 120 NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPEQILMDEP ERMAKGNEDD THRPSASLDQ 180 NQSGSSDKAA LLTNQEEHDA TVISESSGQM VSGTLDSSLH TVAMGESSNQ RESNEQNSLL 240 MTNRLDVEPI MQQKAMELET YVSSEGAKES CIPITEVGAI KEPENFSQKV PDSFDFSLNK 300 DMVAEASKPT EYSKDKSSSR ENNDLEVEHE MQQKDKEMEE MEEMVCTRTA INSPSHISED 360 IEEGEISSDD GMDDRSNDVL LHDTVVLEEK KVPEVQIFKD VLDRKEHSCK VANDKDFGSN 420 SFLVDMVDEG KIDRGAELRE SIRTEMICRP GVVEGKSVKA LNVDESNPLL EGGRIEMQDN 480 GVRMGNGCPA AGNHGITSEE MAKERKKRAE KNRELGVKRL KLHPIQKAKT VAYCRHFVRG 540 RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD HELSKYPCNN FKENGFCSRG 600 DRCMFSHKMP SNEDSATAVC KPELKPPMVL NNSRSQQVNT GGASQQNVHA LAYSTGIHSR 660 NNTKQNVTQT VLKQPEPANK GIRFPSILKS SLVHSIMSKQ EGLAPDRNNG AKAGNQIDQS 720 PLSSVQNSIE ILKRTPPVTT PKGINFLSFG KASPDDAWGK NQVSRQTSPS VSETVKNLNG 780 MLKANQSAAL QGTHFNPFGK SSVASSSSEK PVSLPSFWNN GSNIDSCGSQ TTADKSQNSS 840 GISLRLPPSP LTSGQSSDGI ASRFCKDTAN SFQRGLFSTL AFAAKYKTQN MNQSIGSTGA 900 QVDNETRNSS ISDRFAQ

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence

MEEANIETEK PPQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQLSAA DQNVPQELNQ  60
DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL  120
NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPEQILMDEP ERMAKGNEDD THRPSASLDQ  180
NQSGSSDKAA LLTNQEEHDA TVISESSGQM VSGTLDSSLH TVAMGESSNQ RESNEQNSLL  240
MTNRLDVEPI MQQKAMELET YVSSEGAKES CIPITEVGAI KEPENFSQKV PDSFDFSLNK  300
DMVAEASKPT EYSKDKSSSR ENNDLEVEHE MQQKDKEMEE MEEMVCTRTA INSPSHISED  360
IEEGEISSDD GMDDRSNDVL LHDTVVLEEK KVPEVQIFKD VLDRKEHSCK VANDKDFGSN  420
SFLVDMVDEG KIDRGAELRE SIRTEMICRP GVVEGKSVKA LNVDESNPLL EGGRIEMQDN  480
GVRMGNGCPA AGNHGITSEE MAKERKKRAE KNRELGVKRL KLHPIQKAKT VAYCRHFVRG  540
RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD HELSKYPCNN FKENGFCSRG  600
DRCMFSHKMP SNEDSATAVC KPELKPPMVL NNSRSQQVNT GGASQQNVHA LAYSTGIHSR  660
NNTKQNVTQT VLKQPEPANK GIRFPSILKS SLVHSIMSKQ EGLAPDRNNG AKAGNQIDQS  720
PLSSVQNSIE ILKRTPPVTT PKGINFLSFG KASPDDAWGK NQVSRQTSPS VSETVKNLNG  780
MLKANQSAAL QGTHFNPFGK SSVASSSSEK PVSLPSFWNN GSNIDSCGSQ TTADKSQNSS  840
GISLRLPPSP LTSGQSSDGI ASRFCKDTAN SFQRGLFSTL AFAAKYKTQN MNQSIGSTGA  900
QVDNETRNSS ISDRFAQ