PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g613830.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22855.5 Da PI: 5.605 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.7 | 5.1e-35 | 13 | 111 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck +rrkC + C +ap+fpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+ q++ l+ e Pd.00g613830.m01 13 PCASCKQQRRKCDETCEMAPHFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVNGCLGIIRGLNAQIQGLERE 105 7******************************************************************************************** PP DUF260 94 lallke 99 l+ +k+ Pd.00g613830.m01 106 LHIMKQ 111 *99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MENRDQGAAQ NHPCASCKQQ RRKCDETCEM APHFPASRYS EFQNAHKIFG VSNIQKIMAM 60 AAPDQRQAAA ESILTEGNAR KNDPVNGCLG IIRGLNAQIQ GLERELHIMK QHDQSDGLNS 120 PIHPDLPSHV MVEMRKYEQG YNYWSTLEDA EEKVFDIQLI EPVLFESNLK GNASSSAPGE 180 SSAAASKAKE KQPSKSLQEK TTEDDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-27 | LBD family protein |