PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g613780.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 589aa MW: 65160.2 Da PI: 7.0522

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g613780.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	296	318	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ Pd.00g613780.m01 296 RLCFKFVSSGSCPRGENCNFKHD 318 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MAPPKILLCG DVLGHLKQLF KRVNKSAGPF DALFCVGQFF PDSADQLDEF NDYIEGRAQI 60 PLPTYFIGDY GVTATKVLLA ATKDSGNQGF KLDGLKICNN LYWLKGSGKF KLHGLSVAYL 120 SGLQCSDSQQ FGTYSQDDVD VLRAVAEEPG IIDFGITNRA AASDVPPGAS EPFGSDSTVA 180 ELVAEIKPRY HIAGTKGVYY AREPYSNVDA VHVTRFLGLA PKFIHAISPT PASTMSTVEI 240 STKSPTTTLS PYTYGEKTDH ATEAGKRSSD SISDSQYWRY DVNQKRQKHG AGDGNRLCFK 300 FVSSGSCPRG ENCNFKHDVD AREQSLRGVC FDFMNKGKCE RGPDCKFKHS LQAEGESNSH 360 QRRGSGNANS NRSTECWFCL SSPKVESHLI ISIGEHYYCA LAKGPLVEDH VLLIPIGHSP 420 NTLSLPAECE IELGKFQDAL KQYYKKQGKD VVFFEWASKR TTHANLQAVP VPSAKSAAVQ 480 NIFNLAAEKL SFKFETMKSG NNSDGRKMLR TQFDRNFSFF YVQLPDGTIL SHSIEENERF 540 LPQFGREVIA GLLNKADRAD WRNCTDSKEE EAKMAGDFKS GFEEFDPNK

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MAPPKILLCG DVLGHLKQLF KRVNKSAGPF DALFCVGQFF PDSADQLDEF NDYIEGRAQI  60
PLPTYFIGDY GVTATKVLLA ATKDSGNQGF KLDGLKICNN LYWLKGSGKF KLHGLSVAYL  120
SGLQCSDSQQ FGTYSQDDVD VLRAVAEEPG IIDFGITNRA AASDVPPGAS EPFGSDSTVA  180
ELVAEIKPRY HIAGTKGVYY AREPYSNVDA VHVTRFLGLA PKFIHAISPT PASTMSTVEI  240
STKSPTTTLS PYTYGEKTDH ATEAGKRSSD SISDSQYWRY DVNQKRQKHG AGDGNRLCFK  300
FVSSGSCPRG ENCNFKHDVD AREQSLRGVC FDFMNKGKCE RGPDCKFKHS LQAEGESNSH  360
QRRGSGNANS NRSTECWFCL SSPKVESHLI ISIGEHYYCA LAKGPLVEDH VLLIPIGHSP  420
NTLSLPAECE IELGKFQDAL KQYYKKQGKD VVFFEWASKR TTHANLQAVP VPSAKSAAVQ  480
NIFNLAAEKL SFKFETMKSG NNSDGRKMLR TQFDRNFSFF YVQLPDGTIL SHSIEENERF  540
LPQFGREVIA GLLNKADRAD WRNCTDSKEE EAKMAGDFKS GFEEFDPNK