PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g603920.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 622aa MW: 65138.6 Da PI: 9.4067

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g603920.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4e-08	130	154	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C+f++r+ C +G +C+F+H+ Pd.00g603920.m01 130 GKKDCSFYMRNASCMFGTNCRFNHP 154 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MLKGPIGLPN PDVPPNAELS DLDLAILGEI QKLDARLDKI QKLYPALLDK IRKFDSDVHD 60 ELYNNQVSKD KMQEREGLAA EKPGQTECKD YSRSGGRKYE KACSLNPGRG EPSVAPILEC 120 NFLGLPIRPG KKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESDPPSGYGN GGSASLQGAL 180 SSTAAPWSAP RSLNDAPLYV PVVIPHVQIG SWGNADGVWA QSEAGNKDEA SGWTKPAFIN 240 ENQNDSWKKP SGVDDNKRAS WGKADGGSTW TKQDGDATWN KQGEGSTWNK QDGSSAWNKP 300 AGDSSWSKQA GGSSWGKQAD VTAGHESGGV GNQDNGCKRA SSFGGSQSID GVNGDQPEDF 360 NNNRSGGNWR GGSGRGNSDR GGFRGGRGFV GWSKGADSAG EGWKKDNGGG SWNQGGGNKN 420 DWQGRNSSGW SSRSSSWNQS DVAKGIGGSG SGWNQTMEAK HTAGTQDKGT GSHNEVGRSW 480 GKIGNHQMLL MGINRLAGNN RLQSKKSKEP LIKTAAGTRD RAQTHKLGAG ATRGNQGSGW 540 NKGTGSGFGG STGEQPSAAV GGQSSDWKQS SAASGAQSSS WNQSGEAKQG TDEGAKPTNS 600 WGKAAAASSS AKGTGGSCKG GW

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MLKGPIGLPN PDVPPNAELS DLDLAILGEI QKLDARLDKI QKLYPALLDK IRKFDSDVHD  60
ELYNNQVSKD KMQEREGLAA EKPGQTECKD YSRSGGRKYE KACSLNPGRG EPSVAPILEC  120
NFLGLPIRPG KKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESDPPSGYGN GGSASLQGAL  180
SSTAAPWSAP RSLNDAPLYV PVVIPHVQIG SWGNADGVWA QSEAGNKDEA SGWTKPAFIN  240
ENQNDSWKKP SGVDDNKRAS WGKADGGSTW TKQDGDATWN KQGEGSTWNK QDGSSAWNKP  300
AGDSSWSKQA GGSSWGKQAD VTAGHESGGV GNQDNGCKRA SSFGGSQSID GVNGDQPEDF  360
NNNRSGGNWR GGSGRGNSDR GGFRGGRGFV GWSKGADSAG EGWKKDNGGG SWNQGGGNKN  420
DWQGRNSSGW SSRSSSWNQS DVAKGIGGSG SGWNQTMEAK HTAGTQDKGT GSHNEVGRSW  480
GKIGNHQMLL MGINRLAGNN RLQSKKSKEP LIKTAAGTRD RAQTHKLGAG ATRGNQGSGW  540
NKGTGSGFGG STGEQPSAAV GGQSSDWKQS SAASGAQSSS WNQSGEAKQG TDEGAKPTNS  600
WGKAAAASSS AKGTGGSCKG GW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	4e-26	C3H family protein