PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g597620.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 538aa    MW: 58933 Da    PI: 6.6886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g597620.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0691115526
                       --SGGGGTS...--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                       +C+  a+ G    C+y d+C+F+H+
  Pd.00g597620.m01  91 ICPEVAKRGdvsRCPYSDKCRFSHD 115
                       699999999999************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MDESPAETAP VPEVSNGWAD RTPEELVAKS IAPVKKQFLC PPPIRACSNE QNDAVSGGKT  60
KPAQTSVVKE KKSKRQLKRE RQQAVKSAVG ICPEVAKRGD VSRCPYSDKC RFSHDIEAYK  120
AQKPEDIEGD CPFMTAQETC PYGLACRFLG SHKDVVEAGD VSAHRRSSEM NGLRKDVQKL  180
LWKNKVKFPK ADAKLKALGL LGHANSKIKI LENKKDDQVV SNNCHVTDGN GCTELPNNSD  240
DKMELAAEIR EENGVDETFS LDESRPSKKP RSAIEEEILS GEVDDGGANA TAEVVEPSCT  300
SPEPEVTADI VSPESDRSLK LHPREKKLID FREKLYLAPL TTVGNLPFRR VCKGLGADIT  360
CGEMAMCTNL LQGQASEWAL LRRHSSEDLF GVQICGAYPD TVARTVELVN QECTVDFIDI  420
NMGCPIDIVV NKGAGSALLT KPMRMKGIVQ AASGTVDCPI TIKVRTAYFE GKNRIDSLIA  480
DMGNWGASAV TIHGRSRQQR YSKLADWEYV YQCARKAPDA LPVNLFMGSN FSNSSLLV