PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g597290.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1350aa MW: 146675 Da PI: 4.4545

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g597290.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.4e-06	1326	1348	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ Cr f+++G+Ck G++C + H+ Pd.00g597290.m01 1326 QRVCR-FFESGHCKKGASCDYLHP 1348 68899.8889*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1350 aa Download sequence
MEAEEEDVLK VNEPSVPVEN DAVLSPETQE ELRRAEPQCM SESLPEPELK PETEGFGLGV 60 EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVAEG HGTEDTEIVE ELNVAEGHGT 120 EDTEIVEELS VAEGQVTEET EVGAVDEEDE RGLETEKVLS EEGVVAHSAK EAAEKSNVAE 180 VAEETVISWK DQAEEKTAEV EAEEAEAEAE KVQAVGEQAE AEGERTEEEV EGDDEANVTD 240 MVAETDMVEE VDMADDAMEE TTEAEETEAA EEEAEGMEVE EEEEDEETNR AGSGGKRKRG 300 KSSKATGKLL SKKKMEEDVC FICFDGGELV LCDRRGCPKA YHPSCVNRDE AFFRAKGRWN 360 CGWHLCSNCE KNAHYMCYTC TFSLCKGCTK DALFLCVRGN KGFCETCMKT VMLIEKNEQG 420 NKDTNEVDFD DKTSWEYLFK DYWIDLKERL SLTVDELAQA KNPWKGATGH KQESHDEPYD 480 VNNDEGSESD NSENLDLANS KKRKAKKRLR TRGKGKDSSS PATATGSGGP SADDSTGWGS 540 KELLEFVMHM RNGDKSALSQ FDVQALLLEY IKRNKLRDPR RKSQIICDIR LQNLFGKPRV 600 GHFEMLKLLE SHFLVKEDSQ ADDLQGSVVD TEGNQLEADG NSDTPAKSSK DRRRKTRKKG 660 DGRGPQSNTD DFAAIDIHNI NLIYLKRNLV EDLLDDLDNF GDKVAHSFVR IRISGSGQKQ 720 DLYRLVQVIG TCKAAEPYKV GKRMTDILLE ILNLNKTEII SIDIISNQDF TEDECKRLRQ 780 SIKCGLINRL TVGDVQEKAL ALQAVRVKDW LETEIVRLSH LRDRASEKGR RKELRECVEK 840 LQLLKTPEER QRRLEETLEI HVDPNMDPSY ESEEDEGALF QRGTEGQAGG VSWGSQNEIN 900 SSSGRGTPQS VEVPKYSSDG WSTTNLPSPT PSQTPLGGAR GQAYESNWSP SPVHPGGSVL 960 GGNGVLQPTA VVTPESALRA SGNDRSSSLP GINAAPKSEN ATLLGSTTAL RMHGQVTGSA 1020 PVLSNASMNQ VADVNNLVSN LQNLVQSVTS RAPASDARGW GSGSVPKQEM TASGPVPGSE 1080 SQPWGGAPSQ RIEPNNAATV PAQHHTHGYW NNAPSTNNAP SSMNTGNLAG NFPTSGFSGV 1140 PHSDPWRPPV PSNHTYIQPP AQPQAPWGVG VPDNQSAVPR TGQENQNTSW VPMAGNPNVT 1200 WGGGPVPGNT NMNWGLPSQG PGWTAPSQGP VPGNAVTNWV PPGQGPPSVS ANPGWAPPGQ 1260 GPTLGNANPG WSAPNATQNG DRFSNQRDRG SHGDPGFGGG KPWNRQSSFG SGGGGGGSSR 1320 PPFRGQRVCR FFESGHCKKG ASCDYLHPDH

Sequence ? help Back to Top

Protein Sequence Length: 1350 aa Download sequence

MEAEEEDVLK VNEPSVPVEN DAVLSPETQE ELRRAEPQCM SESLPEPELK PETEGFGLGV  60
EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVAEG HGTEDTEIVE ELNVAEGHGT  120
EDTEIVEELS VAEGQVTEET EVGAVDEEDE RGLETEKVLS EEGVVAHSAK EAAEKSNVAE  180
VAEETVISWK DQAEEKTAEV EAEEAEAEAE KVQAVGEQAE AEGERTEEEV EGDDEANVTD  240
MVAETDMVEE VDMADDAMEE TTEAEETEAA EEEAEGMEVE EEEEDEETNR AGSGGKRKRG  300
KSSKATGKLL SKKKMEEDVC FICFDGGELV LCDRRGCPKA YHPSCVNRDE AFFRAKGRWN  360
CGWHLCSNCE KNAHYMCYTC TFSLCKGCTK DALFLCVRGN KGFCETCMKT VMLIEKNEQG  420
NKDTNEVDFD DKTSWEYLFK DYWIDLKERL SLTVDELAQA KNPWKGATGH KQESHDEPYD  480
VNNDEGSESD NSENLDLANS KKRKAKKRLR TRGKGKDSSS PATATGSGGP SADDSTGWGS  540
KELLEFVMHM RNGDKSALSQ FDVQALLLEY IKRNKLRDPR RKSQIICDIR LQNLFGKPRV  600
GHFEMLKLLE SHFLVKEDSQ ADDLQGSVVD TEGNQLEADG NSDTPAKSSK DRRRKTRKKG  660
DGRGPQSNTD DFAAIDIHNI NLIYLKRNLV EDLLDDLDNF GDKVAHSFVR IRISGSGQKQ  720
DLYRLVQVIG TCKAAEPYKV GKRMTDILLE ILNLNKTEII SIDIISNQDF TEDECKRLRQ  780
SIKCGLINRL TVGDVQEKAL ALQAVRVKDW LETEIVRLSH LRDRASEKGR RKELRECVEK  840
LQLLKTPEER QRRLEETLEI HVDPNMDPSY ESEEDEGALF QRGTEGQAGG VSWGSQNEIN  900
SSSGRGTPQS VEVPKYSSDG WSTTNLPSPT PSQTPLGGAR GQAYESNWSP SPVHPGGSVL  960
GGNGVLQPTA VVTPESALRA SGNDRSSSLP GINAAPKSEN ATLLGSTTAL RMHGQVTGSA  1020
PVLSNASMNQ VADVNNLVSN LQNLVQSVTS RAPASDARGW GSGSVPKQEM TASGPVPGSE  1080
SQPWGGAPSQ RIEPNNAATV PAQHHTHGYW NNAPSTNNAP SSMNTGNLAG NFPTSGFSGV  1140
PHSDPWRPPV PSNHTYIQPP AQPQAPWGVG VPDNQSAVPR TGQENQNTSW VPMAGNPNVT  1200
WGGGPVPGNT NMNWGLPSQG PGWTAPSQGP VPGNAVTNWV PPGQGPPSVS ANPGWAPPGQ  1260
GPTLGNANPG WSAPNATQNG DRFSNQRDRG SHGDPGFGGG KPWNRQSSFG SGGGGGGSSR  1320
PPFRGQRVCR FFESGHCKKG ASCDYLHPDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein