PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g592180.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20514.6 Da    PI: 8.1961
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g592180.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.8e-111962850
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                       r vtf kR++ ++ K  E+ +LC++ ++ +++  s+ k+  ++
  Pd.00g592180.m01 19 VRRVTFKKRKASLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 62
                      589**********************9998777751567888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MSKESALSFM IGNASRAHVR RVTFKKRKAS LFRKLTEITT LCGIIACAVV YDPSDSKMDA  60
WPSPQEAFYV LENFKKLPEQ RRGQFMMDQK AFLKKNISRL NGQLERARFK NQALDAELLL  120
IEYLEGKNLS DSSRLGSLLA LEDQLAKKIS FITNRIEFME VLEPNEVDAE INSDEMGDQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-22M-type_MADS family protein