PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g573900.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LSD

Protein Properties

Length: 629aa MW: 70901 Da PI: 9.0587

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g573900.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.2	2.4e-12	460	484	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + Pd.00g573900.m01 460 CSGCRSILLYPRGATNVCCALCNII 484 **********************975 PP
2	zf-LSD1	41.2	2.6e-13	499	523	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV Pd.00g573900.m01 499 CGGCRTLLMHTRGATSVRCSCCHTV 523 ************************9 PP
3	zf-LSD1	45.1	1.7e-14	537	561	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Pd.00g573900.m01 537 CGNCRTTLMYPYGAPSVKCAVCHYV 561 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MMRVRCMGAF SNPIASNTAP VARGVVKFEF FEQNQMGTQF TRWIMKHPHQ HFLAVRLKTT 60 SSQYVASRAR DPTFEKLMDK YKNLLKVIAV QDLILANPTN PAVSIDFLSR LSQKLHLNRG 120 AVSFLRKYPH IFHIYHDPTK SQTFCRLTDA AIQISKEEAE VINASLPLVV DRLVRLLSMS 180 RSRMLPLRAI LKVGRELGLP DDFEDSVISR NSHLFQLCDA HEPNTHNLKL FDVIPDKFTA 240 AVENWRVEEY CKEGCNVDRA EIQFSFKHGY PPGMRLRKNF RAKVKEWQRL PYVGPYDEVS 300 EKKRSSKAGM MAVEKRAVAT VHEFLNLTVE KTVEVEKISH FRKWFGFDLN IRDLFLDHPG 360 IFYLSTKGKR HTVFLREAYE RGCLIHPNPV YHARRKLLDL VVLGRHGLLT DELRSIASNK 420 EAESLEQICE DMRISSLVGL WEDFREPEFH EESMQSQLVC SGCRSILLYP RGATNVCCAL 480 CNIITPVPPP GTEMAQLICG GCRTLLMHTR GATSVRCSCC HTVNLAPASS QVAHVNCGNC 540 RTTLMYPYGA PSVKCAVCHY VTNVGMTNMR VPIPVHRPNG TANSGMAPST STAMPHSQSQ 600 TVVVENPMSV DESGKLVSNV VVGVTTGKK

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MMRVRCMGAF SNPIASNTAP VARGVVKFEF FEQNQMGTQF TRWIMKHPHQ HFLAVRLKTT  60
SSQYVASRAR DPTFEKLMDK YKNLLKVIAV QDLILANPTN PAVSIDFLSR LSQKLHLNRG  120
AVSFLRKYPH IFHIYHDPTK SQTFCRLTDA AIQISKEEAE VINASLPLVV DRLVRLLSMS  180
RSRMLPLRAI LKVGRELGLP DDFEDSVISR NSHLFQLCDA HEPNTHNLKL FDVIPDKFTA  240
AVENWRVEEY CKEGCNVDRA EIQFSFKHGY PPGMRLRKNF RAKVKEWQRL PYVGPYDEVS  300
EKKRSSKAGM MAVEKRAVAT VHEFLNLTVE KTVEVEKISH FRKWFGFDLN IRDLFLDHPG  360
IFYLSTKGKR HTVFLREAYE RGCLIHPNPV YHARRKLLDL VVLGRHGLLT DELRSIASNK  420
EAESLEQICE DMRISSLVGL WEDFREPEFH EESMQSQLVC SGCRSILLYP RGATNVCCAL  480
CNIITPVPPP GTEMAQLICG GCRTLLMHTR GATSVRCSCC HTVNLAPASS QVAHVNCGNC  540
RTTLMYPYGA PSVKCAVCHY VTNVGMTNMR VPIPVHRPNG TANSGMAPST STAMPHSQSQ  600
TVVVENPMSV DESGKLVSNV VVGVTTGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	6e-72	LSD family protein