PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g565700.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 309aa MW: 35236.4 Da PI: 9.3034

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g565700.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.6	9e-30	49	99	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Pd.00g565700.m01 49 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSS 99 79***********************************************96 PP
2	K-box	72.4	1.3e-24	124	211	11	98
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++e+ + + + + k+i+ ++ ++ +llG++Les+s++eLqq e+qLe+sl+kiR++K++ll+eqie+l++ ek+l e+n +Lr+k Pd.00g565700.m01 124 QVDMEHGKDDTSSMAKKIDFIEASKQKLLGNCLESCSIEELQQTENQLERSLSKIRARKTQLLREQIEKLKEEEKNLFEQNAKLREKC 211 556788899999*************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MFAVLAFKRL AARSNSHRPQ RVGFWDFSVS HISILDFAEN MVRGKTQMKR IENAASRQVT 60 FSKRRNGLLK KAFELSVLCD AEVALIIFST RGKLYEFSSS SISNTLDRYE KRVKDQGLGS 120 RAVQVDMEHG KDDTSSMAKK IDFIEASKQK LLGNCLESCS IEELQQTENQ LERSLSKIRA 180 RKTQLLREQI EKLKEEEKNL FEQNAKLREK CGMQPLCPPS TRKDGENCAV RQPRTPDLED 240 VETDLLQGWY NKLQRDEVVA EWKKVKDKMS LHVHCHISGG FEGLCSWGWQ SVQQVPRIAG 300 GFGLGLLPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	2e-61	MIKC_MADS family protein