PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g560890.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 376aa MW: 42921.4 Da PI: 8.7608

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g560890.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.8	2e-13	87	176	5	99
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk.egDfvvFkldgrsefelv 93 l ++++++++p kf++++ +++ e l+l+d+s sW+v++ k++++ +++++GW+eF k+n L +++++ + ++g++ f Pd.00g560890.m01 87 L---AGFNTDCVRVPQKFLKHMlkDLS--ERAILKLKDSSDSSWTVTV--HKTREGaVYFKNGWEEFIKDNSLGtDNEMLQLFYEGKMHF--S 170 4...55677889*****77775444..5569***********..5555555**************97788888888887888..8 PP EEEE-S CS B3 94 vkvfrk 99 v++f k Pd.00g560890.m01 171 VRIFGK 176 888765 PP
2	B3	56.7	4.5e-18	296	375	16	99
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p f +eh ++ ++++ +l++ +g +W+v++ + ++++++ +++GW +Fv+an++++gD+++F+l + + +++v+++rk Pd.00g560890.m01 296 QFIPTAFSREHF-PQGKGFKAILKNAEGGKWTVNC-IPNSPQSHNFSAGWYKFVSANQIRVGDTCIFELLS--RYQMMVHILRK 375 579******4.346799************.6999999***********************876..55569999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MRWLRFGVVL VCWSERASLF TLPSSFLSPQ FSSLSIFKAS QSTQSAAAVT SQQNPQKHRA 60 LSAQTEEKMA RKVSKNEEKK HSFFKLLAGF NTDCVRVPQK FLKHMLKDLS ERAILKLKDS 120 SDSSWTVTVH KTREGAVYFK NGWEEFIKDN SLGTDNEMLQ LFYEGKMHFS VRIFGKNGIE 180 RSEELSSSEE EEEDSEDNTS EDLEADFTKI GSLHNSLAKN TTKRPRGRPR KYPVSSSKPR 240 PLKSCKVESG EELSSIKEEE EDSEDSTSED LEGVEPEAFK SNFPYFKGII RQTKCQFIPT 300 AFSREHFPQG KGFKAILKNA EGGKWTVNCI PNSPQSHNFS AGWYKFVSAN QIRVGDTCIF 360 ELLSRYQMMV HILRKR

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MRWLRFGVVL VCWSERASLF TLPSSFLSPQ FSSLSIFKAS QSTQSAAAVT SQQNPQKHRA  60
LSAQTEEKMA RKVSKNEEKK HSFFKLLAGF NTDCVRVPQK FLKHMLKDLS ERAILKLKDS  120
SDSSWTVTVH KTREGAVYFK NGWEEFIKDN SLGTDNEMLQ LFYEGKMHFS VRIFGKNGIE  180
RSEELSSSEE EEEDSEDNTS EDLEADFTKI GSLHNSLAKN TTKRPRGRPR KYPVSSSKPR  240
PLKSCKVESG EELSSIKEEE EDSEDSTSED LEGVEPEAFK SNFPYFKGII RQTKCQFIPT  300
AFSREHFPQG KGFKAILKNA EGGKWTVNCI PNSPQSHNFS AGWYKFVSAN QIRVGDTCIF  360
ELLSRYQMMV HILRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	231	KRPRGRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16210.2	6e-12	B3 family protein