PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g553940.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 573aa    MW: 62925 Da    PI: 5.5447
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g553940.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.71.5e-982165724374
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lL+++Ae +++g+ +laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++  ++ + s+    + + ++ a+k fse+sP+l+f+++
  Pd.00g553940.m01 216 LLFNAAELIETGNPALAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHI-NTSSNSSNALSPF---SLIFKIGAYKSFSEISPVLQFANF 304
                       799*********************************************9998.3333333444444...49********************** PP

              GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                       t+NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R+ g+ps++iT++ s++++++ e+  t+e+L++fA+el+++fe +++  ++l+  
  Pd.00g553940.m01 305 TCNQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNCGAPSFKITAFISSSTHDEFEIGFTRENLKHFASELNLSFELELVSLEALN-S 396
                       *****************************************************9*9***************************97444444.4 PP

              GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                         + L ++  E +aV + l + ++ ++++sl+      L++vk+lsPk+vv  ++ +d+++ +F++++++al+ ys l++sl+a    + ++ 
  Pd.00g553940.m01 397 GSWGLPLHVSEGVAVAVNLPIGSFSNNPLSLTM----ALRFVKQLSPKIVVSLDRGSDRTDVPFAHQVIQALHSYSGLLESLDAV-NVNPDAL 484
                       467776666777777777777888889999999....*********************************************665.3466899 PP

              GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +k+Er ll++ i+++v+ ++ +     ++   Wr  ++++GF+p+ +s+++++qa++l++++++ g+++e+++ slvl+W+++ L+sv++Wr
  Pd.00g553940.m01 485 QKIERYLLQPGIEKIVTGRHLS----PKRTPPWRTLFSSSGFSPLIFSNFTESQAECLVQRTPVGGFHIEKRQSSLVLCWQRKDLISVTVWR 572
                       9****************99998....9999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MEDWDGVLSD SPGQEQSILR LIMSDIEDPS LGLNKLLQSG SGSDQQDLEF SAGFHDVVDQ  60
GGYDGFEPNT GNLVSNINVD PSLHATSGSD FAFSNSSPNV QSTNVRLGSS SSPSSMFSAS  120
MNNPFPASLS PGMFQQQQQH IGMDEKPQIF NPQMVMNQNQ AQFTQNPAMF MPLTYAQLQE  180
HHLLSPPPPK RLNSGGFGPN YPGQRAPFLN PGQELLLFNA AELIETGNPA LAQGILARLN  240
HQLSPIGKPF QRAAFYFKEA LQLLLHINTS SNSSNALSPF SLIFKIGAYK SFSEISPVLQ  300
FANFTCNQAI LEAVEGFNRV HVIDFDIGYG GQWASFMQEV ALRNCGAPSF KITAFISSST  360
HDEFEIGFTR ENLKHFASEL NLSFELELVS LEALNSGSWG LPLHVSEGVA VAVNLPIGSF  420
SNNPLSLTMA LRFVKQLSPK IVVSLDRGSD RTDVPFAHQV IQALHSYSGL LESLDAVNVN  480
PDALQKIERY LLQPGIEKIV TGRHLSPKRT PPWRTLFSSS GFSPLIFSNF TESQAECLVQ  540
RTPVGGFHIE KRQSSLVLCW QRKDLISVTV WRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-150GRAS family protein