PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g549420.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22547.1 Da    PI: 9.5107
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g549420.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.54.9e-201760245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      +i   sn qvtf+kRr g++KKA+EL++ C++e+a+++fs+ +k
  Pd.00g549420.m01 17 KIAKRSNLQVTFCKRRSGLFKKASELCTVCGVEIAIVVFSPANK 60
                      577899***********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MMKKKPGQGR QKIPIAKIAK RSNLQVTFCK RRSGLFKKAS ELCTVCGVEI AIVVFSPANK  60
PFSFGHPHVE PILDRFLCTP KPSVDSDFTS QQLLVDQAQG YMSDTSVHEL NMVLTQTQKH  120
LEAEKKRGQE LDEMSKAGQG SSRRCWWENP IYEMGLHEIQ ILKAAMKEVK KNVIEQVNKI  180
LKIQSCAAVN SQYHSSDEW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-51M-type_MADS family protein