PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g543920.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 330aa    MW: 38464.7 Da    PI: 6.618
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g543920.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.75.9e-2119109190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fY++YA  +GFs+r+s+ ++s + + +++r+ vCskeg+r+++ ++ ++  r++r+etr +C+a++ vk    ++ + vtk+++eH+H+la
  Pd.00g543920.m01  19 RFYCNYALAIGFSIRRSRLRRS-EGEVVMERQCVCSKEGSRSKKWTNrDDMVRTPRKETRENCHATFAVKYCPkRDAYIVTKFVTEHSHQLA 109
                       5********************9.7788***************9988846677889*****************999***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MSIVDLAERE FAKFEEVERF YCNYALAIGF SIRRSRLRRS EGEVVMERQC VCSKEGSRSK  60
KWTNRDDMVR TPRKETRENC HATFAVKYCP KRDAYIVTKF VTEHSHQLAN SREVPFLRSN  120
WWIHESGVHS KDLYNKMDFE HRQVVLDGDA QAAISYMNAK AIADPEFFCM FSVDEENRLA  180
NLFWRGSQSL HDYCCFGDVV IFNSTYKTNV YDKPLVVFVG VNNHNATIVF GCAFLVDETV  240
DTYRWILRTF LTSMKDKKLV SIVTDGDEAM HVAIDEVFPD AHHCLCKWHI MRDVNTNVNN  300
PEIVREFSYC VHGGLTPVAF EQHWQQMIDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-50FAR1 family protein