PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g536180.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 441aa    MW: 48181.5 Da    PI: 6.305
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g536180.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3451.2e-105544321374
              GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsev 87 
                       l++lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l + +    k l  + t++++    ++++aa++l++++
  Pd.00g536180.m01  54 LIHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGAGGVQGKHLIGNGTHRDHghhPTDVIAAFQLLQDM 146
                       689*********997776669***********9987769******************966655566644444444445699************ PP

              GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                       sP++kf+h+taNqaIleav +++rvH++D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg  s  +++etg+rL+ fA+++g pf
  Pd.00g536180.m01 147 SPYVKFGHFTANQAILEAVVHDRRVHVVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGTVQETGRRLTAFAASIGQPF 239
                       *************************************************776556*********888898999******************** PP

              GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalf 268
                       +f+    ++ e++++++L++ +gEal++n++l+l ++  +s ++     ++L+  k+l+P++v++ve+e+   +++ F++rf+++l++ysa++
  Pd.00g536180.m01 240 SFHQCRLDSDETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIA---SFLSGAKTLNPRLVTLVEEEVRPaGDGGFVARFTDSLYHYSAVY 329
                       ****9999*****************************966665555...9********************999******************** PP

              GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvl 360
                       dslea++p +s++r+ vEr++lg++i   +a   ++   + e   +W+e+l+++GFkp+p+s  + +qaklll  ++ dgyrvee  ++ lvl
  Pd.00g536180.m01 330 DSLEAGFPMQSRARALVERVFLGPRIAGSLARIYRA---NGEVGCSWSEWLGAVGFKPMPISFANHCQAKLLLGLFN-DGYRVEEVsNHRLVL 418
                       **********************************99...889999********************************.******76377899* PP

              GRAS 361 gWkdrpLvsvSaWr 374
                       gWk+r L+s+S W+
  Pd.00g536180.m01 419 GWKSRCLLSASIWT 432
                       *************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MMEDQDGTEL NSSSAQDEVH ELEASNDTTS SGEIMMLTEE DGGANGEDSK GLRLIHLLMA  60
AAEALTGANK SRDLARVILV RLKELVSPTD GTNMERLAAY FTEALQGLLE GAGGVQGKHL  120
IGNGTHRDHG HHPTDVIAAF QLLQDMSPYV KFGHFTANQA ILEAVVHDRR VHVVDYDIME  180
GIQWASLMQA LVSRKDGPPT PHLRITALSR GGSGRRSIGT VQETGRRLTA FAASIGQPFS  240
FHQCRLDSDE TFRPSALKLV KGEALVINCM LNLPHFSYRS PDSIASFLSG AKTLNPRLVT  300
LVEEEVRPAG DGGFVARFTD SLYHYSAVYD SLEAGFPMQS RARALVERVF LGPRIAGSLA  360
RIYRANGEVG CSWSEWLGAV GFKPMPISFA NHCQAKLLLG LFNDGYRVEE VSNHRLVLGW  420
KSRCLLSASI WTSPSESDFV N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-155GRAS family protein