PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g535160.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 2293aa MW: 251671 Da PI: 5.9565

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g535160.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.4	3.9e-18	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krien+snrqvt+skRrngi+KKA+E+ vLCda+ Pd.00g535160.m01 9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAK 42 79******************************96 PP
2	K-box	43	2e-15	41	94	14	67
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRs 67 a++l++e++++kk ++++q e+Rhl+ ed++sL++keL+ Le++Le++l + R+ Pd.00g535160.m01 41 AKNLSNEVDRVKKDNDSMQVELRHLKAEDITSLTHKELMALENALENGLASGRA 94 589**********************************************87665 PP

Sequence ? help Back to Top
Protein Sequence Length: 2293 aa Download sequence
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKNLSNEVDR VKKDNDSMQV 60 ELRHLKAEDI TSLTHKELMA LENALENGLA SGRALEEEHK RLTYELIGLF RLSVSSSLRR 120 GSQGNAILGF SLCAQTALDK FRMASCENSA FVDGLLCESV TEQQMSSEIL VQSISELPSC 180 SDDKSLLDSN VDPISISDRS LGLSRNDNAD AGCMSWGEIV DVDIDGLMGE HENANVSEPG 240 NILTREWGLN RCCLTESQSN VDDSNREGGP QGEDRSAGSF GDCEIPLEVI PQTVSPGHGI 300 QQDEQRYDNY LFSEGVREVT EEMKNDIHEL VSPLQGCEIP SELADMEACG SSQQEEKGFN 360 IISGSSFEAA CEESVVLARI EADLCNRTSP KRDGGMPSEV LYACDLVSNC VWKNEEMEDN 420 GVSGLNSLST ERTTEVVDTR CNQILPSQGF PRTLEDLHMP DSPSSCAQQN DQRSDKVNGG 480 SFVERATEYL EETSDALPDE RAVIHTQILP VKVNVYYSKE GSSKIAPDCV IENSVSMQSC 540 QTFGTANNSV NGPSADSVTE VVEMESHIDA DNQIVPPEGC QRAFEGSHVS DSPSVCTQEN 600 GESNGKIIGF LSAKRVTEFE EQKSDATTDI KVEFGAQILL LEEKASNLKE SSSELSPKSI 660 HEKSVSMQSF QPFDIVNSGS SERLDVPDKD SPAHVDSSTS FDRYGEMDHE GNDNVRVDCV 720 SNTKCVALSS RRSGRSRKTQ TKRAPRKGRN TSKVLDPLGS VEIVFKAAGR KRSCLSKPAR 780 SSIWGLLGNV TQSFEESNRL EVSQGLIQGS QKGRGGQRSG KRNPSGASGN SRGSRGKCRA 840 STNHVRLKVK LGKEMGKSSF YIRVPEVVDN TAYENSVEKE NGIEGNWNKE ATLREDKTCL 900 DGPVLDGDLA NKDLESVVLT ENSAEDVIEN FPGGSSHTIA VSSGGSVGTN YRDPGTSPDS 960 EVTNLVPDAD VEARPLEDSN GIVLTSDKAF SASGDFISTK RGKKKHKVPH VENCVREDGI 1020 PCPASINKEK PSKQDGRRQN VSQDFCPSET FTSSTCANAS SNSSSDMESS LEPLRLSGET 1080 DHGISRDVLK VEVGAEAKTH CNLDVGLGLS KSQSSKTKGL KPPKGRSRGC GSASKKGNSH 1140 RLRENQKKSV NQKNAMEKAV GDQVAFKVES LPESDDHLVD GIRKANSVKD AVCIGVPNSD 1200 TVPVDLDKPY APPRNAWVLC DDCHKWRRIP AELADVIDEI KCTWTCRDNK DKAFADCSIP 1260 QEKSNSEINA ELDISDASGD EDASVTRLNY KELERRRPTV SQQNVASIKT NQFLHRNRKT 1320 QTIDEIMVCH CKPPSDGQLG CGDDCLNRML NIECIRGACP CRDLCSNQQF QKRRYAKLEK 1380 FRCGKKGFGL RLLDDIFKGQ FLIEYVGEVL DTHAYEARQK EYALKAHRHF YFMTLNGSEV 1440 IDACAKGNLG RFINHSCDPN CRTEKWMVNG EICIGLFALR DIKKGEEVTF DYNYVRVFGA 1500 AAKKCYCGSA QCRGYIGGDP LDSEVIIQDD SDEEYIEPVM IPEDGISEKV ESASTNKEMD 1560 KSKIAVGELE FTTQREESVN PSESAVSHIH DSLELEHSRQ KLPSSVQPVE ASEHKEETSG 1620 PMSVVQQEIL RENETKEKSS ISFERLEIAS PIKVLSKSLS DGIDANRKSK SDTTEDRQVS 1680 SKVRPNVKTS RSSSFVKKGK VRIIPSGNKI QVAANKSHVL SIKPKRLTEG SVEEKLNELL 1740 DVDGGINKRK DSTKGYLKLL FLTAVSGDSG NGEAIQSNRD LSMILDALLK TRSRVVLIDV 1800 INKNGLRMLH NIMKKYREDF KKIPILRKLL KVLSLSLSLS LFSCGVLEYL AVKQILTLEH 1860 ITGGPPCPGM ESFMESMLSL TEHKDKQVHQ IARNFRDRWI PRHLRRHGFV DRDDSKMEFN 1920 RGSNCNRLST SHDNWRDQSG RSTDTTDSIK QSVLSTTSVS TGVQDCSAPC TGGCPTSVTK 1980 VRKRKSRWDQ PAETIPDSSS LQNKEQKTES GLHKPSPLSG TGEVALHLES VSGDDGNCSS 2040 SVHDNSQQND GAQINLEDVP PGFSSYIRTP MVSSIASSSF CPLTCPAAVI GHPQEKFVSR 2100 LSVSYGFPLS MMQQYGTPHA ETVGTWAVAP GIPFQPFPPL PPFPRHKKDP SPYPTVNHVS 2160 GNQPAGGQPD WCVPATSQSE ESTPSTTGSN QADFGSPCAN NQYSSKRVRE SSNDLGRRYF 2220 KQQKYWNNTK LRPPSFSDRN GWGCTGNNSG GGTADGIGVG HVANELSTSY CSDDLSYRVE 2280 KAGNNVNQHS HHH

Sequence ? help Back to Top

Protein Sequence Length: 2293 aa Download sequence

MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKNLSNEVDR VKKDNDSMQV  60
ELRHLKAEDI TSLTHKELMA LENALENGLA SGRALEEEHK RLTYELIGLF RLSVSSSLRR  120
GSQGNAILGF SLCAQTALDK FRMASCENSA FVDGLLCESV TEQQMSSEIL VQSISELPSC  180
SDDKSLLDSN VDPISISDRS LGLSRNDNAD AGCMSWGEIV DVDIDGLMGE HENANVSEPG  240
NILTREWGLN RCCLTESQSN VDDSNREGGP QGEDRSAGSF GDCEIPLEVI PQTVSPGHGI  300
QQDEQRYDNY LFSEGVREVT EEMKNDIHEL VSPLQGCEIP SELADMEACG SSQQEEKGFN  360
IISGSSFEAA CEESVVLARI EADLCNRTSP KRDGGMPSEV LYACDLVSNC VWKNEEMEDN  420
GVSGLNSLST ERTTEVVDTR CNQILPSQGF PRTLEDLHMP DSPSSCAQQN DQRSDKVNGG  480
SFVERATEYL EETSDALPDE RAVIHTQILP VKVNVYYSKE GSSKIAPDCV IENSVSMQSC  540
QTFGTANNSV NGPSADSVTE VVEMESHIDA DNQIVPPEGC QRAFEGSHVS DSPSVCTQEN  600
GESNGKIIGF LSAKRVTEFE EQKSDATTDI KVEFGAQILL LEEKASNLKE SSSELSPKSI  660
HEKSVSMQSF QPFDIVNSGS SERLDVPDKD SPAHVDSSTS FDRYGEMDHE GNDNVRVDCV  720
SNTKCVALSS RRSGRSRKTQ TKRAPRKGRN TSKVLDPLGS VEIVFKAAGR KRSCLSKPAR  780
SSIWGLLGNV TQSFEESNRL EVSQGLIQGS QKGRGGQRSG KRNPSGASGN SRGSRGKCRA  840
STNHVRLKVK LGKEMGKSSF YIRVPEVVDN TAYENSVEKE NGIEGNWNKE ATLREDKTCL  900
DGPVLDGDLA NKDLESVVLT ENSAEDVIEN FPGGSSHTIA VSSGGSVGTN YRDPGTSPDS  960
EVTNLVPDAD VEARPLEDSN GIVLTSDKAF SASGDFISTK RGKKKHKVPH VENCVREDGI  1020
PCPASINKEK PSKQDGRRQN VSQDFCPSET FTSSTCANAS SNSSSDMESS LEPLRLSGET  1080
DHGISRDVLK VEVGAEAKTH CNLDVGLGLS KSQSSKTKGL KPPKGRSRGC GSASKKGNSH  1140
RLRENQKKSV NQKNAMEKAV GDQVAFKVES LPESDDHLVD GIRKANSVKD AVCIGVPNSD  1200
TVPVDLDKPY APPRNAWVLC DDCHKWRRIP AELADVIDEI KCTWTCRDNK DKAFADCSIP  1260
QEKSNSEINA ELDISDASGD EDASVTRLNY KELERRRPTV SQQNVASIKT NQFLHRNRKT  1320
QTIDEIMVCH CKPPSDGQLG CGDDCLNRML NIECIRGACP CRDLCSNQQF QKRRYAKLEK  1380
FRCGKKGFGL RLLDDIFKGQ FLIEYVGEVL DTHAYEARQK EYALKAHRHF YFMTLNGSEV  1440
IDACAKGNLG RFINHSCDPN CRTEKWMVNG EICIGLFALR DIKKGEEVTF DYNYVRVFGA  1500
AAKKCYCGSA QCRGYIGGDP LDSEVIIQDD SDEEYIEPVM IPEDGISEKV ESASTNKEMD  1560
KSKIAVGELE FTTQREESVN PSESAVSHIH DSLELEHSRQ KLPSSVQPVE ASEHKEETSG  1620
PMSVVQQEIL RENETKEKSS ISFERLEIAS PIKVLSKSLS DGIDANRKSK SDTTEDRQVS  1680
SKVRPNVKTS RSSSFVKKGK VRIIPSGNKI QVAANKSHVL SIKPKRLTEG SVEEKLNELL  1740
DVDGGINKRK DSTKGYLKLL FLTAVSGDSG NGEAIQSNRD LSMILDALLK TRSRVVLIDV  1800
INKNGLRMLH NIMKKYREDF KKIPILRKLL KVLSLSLSLS LFSCGVLEYL AVKQILTLEH  1860
ITGGPPCPGM ESFMESMLSL TEHKDKQVHQ IARNFRDRWI PRHLRRHGFV DRDDSKMEFN  1920
RGSNCNRLST SHDNWRDQSG RSTDTTDSIK QSVLSTTSVS TGVQDCSAPC TGGCPTSVTK  1980
VRKRKSRWDQ PAETIPDSSS LQNKEQKTES GLHKPSPLSG TGEVALHLES VSGDDGNCSS  2040
SVHDNSQQND GAQINLEDVP PGFSSYIRTP MVSSIASSSF CPLTCPAAVI GHPQEKFVSR  2100
LSVSYGFPLS MMQQYGTPHA ETVGTWAVAP GIPFQPFPPL PPFPRHKKDP SPYPTVNHVS  2160
GNQPAGGQPD WCVPATSQSE ESTPSTTGSN QADFGSPCAN NQYSSKRVRE SSNDLGRRYF  2220
KQQKYWNNTK LRPPSFSDRN GWGCTGNNSG GGTADGIGVG HVANELSTSY CSDDLSYRVE  2280
KAGNNVNQHS HHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-33	MIKC_MADS family protein