PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g530340.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19666.8 Da    PI: 4.6722
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g530340.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.2e-14954146
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                      k+i+nk   + tfskRr g++ KA  L+ L +a++a+i fs+ +k 
  Pd.00g530340.m01  9 KKINNKNYLKATFSKRRRGLFSKATDLCCLSGAQIAIITFSPGNKT 54
                      6899*************************************99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MGTRKINIKK INNKNYLKAT FSKRRRGLFS KATDLCCLSG AQIAIITFSP GNKTFLFGNP  60
SAKAVLDRFL GEQDSCTSDD HHEEGHGSTP EDSDHEDLDA SREESSEIED VMDEDRVNFW  120
WDEPIDDELG LYELQKYKGL LEALKENVAS KLDDMNRREF STKDFLSMFR NS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-26M-type_MADS family protein