PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g530330.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23248.6 Da    PI: 4.2938
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g530330.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.6e-15953145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      k+i+nk   + tfskRr+g++ KA  L+ L +a++a+i fs+ +k
  Pd.00g530330.m01  9 KKINNKNYLKATFSKRRKGLFRKATDLCCLSGAQIAIITFSPGNK 53
                      68999************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MGKKKIDIKK INNKNYLKAT FSKRRKGLFR KATDLCCLSG AQIAIITFSP GNKPFIFGHP  60
SAETVIDRFL GEQASCTTDG DDDEGIGPVE GEDGHEDLEA SHDEEDIGSV DAEDSREDSE  120
AHQEEEKEDE AGGDGEKVSV WWDEPIDENL GLHELKKYKG LLECLKENVA SKLDEMNKRE  180
FYTKDYLAML NSEMGSTSTT CQERDLCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-25M-type_MADS family protein