PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g530110.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 389aa    MW: 43633.9 Da    PI: 3.9215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g530110.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.83.4e-091254850
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       r++  +kR  ++  KA  LS LCd+ v +i ++ +gk+ +++
  Pd.00g530110.m01 12 PRKTAMAKRGSTLKNKAGRLSKLCDIAVYMIALGADGKINDWP 54
                      599***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    
MKMKRVSDAM KPRKTAMAKR GSTLKNKAGR LSKLCDIAVY MIALGADGKI NDWPENQQDL  60
KSVILKYKNL KRGFKDQIEK GLFSVEKGFL EFVDDGENRD LGIQDNCLGA NFMDLYKNIM  120
EPDAADQQQQ SSLNLNLNLH PTDLVIPTPK PNLIGEINLN LDPGNVVIPT PKPNLIGQFQ  180
QDYLSSIHEP TVDANDYLSL VLGNDDHNDV GLMEDYLQLR DLELPEEPQE QLQPQPPSVP  240
SVEISDDDDM KLLLSDCEIG LMEDDMQFCD NLDDYEPTVD TIYDFLSWVL GDEDQIDNGV  300
MEDDLQPQST NHNGVSSMEG LKIDGHDVVN VGPSMSITDD DIWLLLTDCA IGLMQEDDDN  360
DLSDFLAPLE TMLLQVPQHQ PHSELNLNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.18e-09M-type_MADS family protein