PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g530090.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 105aa MW: 12023.1 Da PI: 10.4805 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.3 | 5.2e-10 | 6 | 54 | 3 | 50 |
--SHHHHHHH.HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvt.fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++ ++ q t ++R ++ KA LS LCd+ v +i ++ +gk+ +++ Pd.00g530090.m01 6 VSDAMKPQKTaMARRGSTLKNKAGRLSMLCDIAVYMIAVGADGKINDWP 54 555555554505555566666***************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence |
MKMKRVSDAM KPQKTAMARR GSTLKNKAGR LSMLCDIAVY MIAVGADGKI NDWPENQQDL 60 KSVVLKYKNL KRGFKDRIEK GLFSVEKGFL EIVDDRENRD LVSWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 2e-09 | M-type_MADS family protein |