PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g528730.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 503aa MW: 57812.4 Da PI: 9.7377

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g528730.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.8	6e-23	280	323	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ Pd.00g528730.m01 280 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 323 67999*************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MTIPQTRNFG LPFMNLIRLK GIPILQQLHL EEQLLRTSSD NWCIMNDGTK DPTIVMGISG 60 KPAELLELDL VLRDQIPVIR RFTGGGTVTV DHNTVFVTFI CNTDAVAGLQ PYPRPIMSWS 120 SLLYSRVFEG RGDFQLREND YVFGNRKFGG NAQSITKTRW IHHTSFLWDY EVRNMAYLRL 180 PKRIPEYRLA RDHLEFICCL KDYIPRSVFL DRTVDALRTQ FSVRSEQLDA FEATSNAKFV 240 PSTRLLTRQE LEEAAFGSHA ESTLSQSLSL MGRVKLKIKK LESSGNRQVT FSKRRNGILK 300 KAKELSILCD VDIVLLMFSP TGRPTLLQGE RSNVEEIISK FAQLTPQERA KRKLESLEAL 360 KKTFKKLDHD VNVQEFMSSS TQTVQDLTTQ VRVLQAQLTE IHKRLSFWCN PDKVDNLEHL 420 SQMEDMLKES INRTRLHKEN LGKHQLTSLN CTSQVLVFKY IRNFDPVIVQ GASSSKHKTQ 480 RSYSCIQCYR FDTSAADTWR AHG

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MTIPQTRNFG LPFMNLIRLK GIPILQQLHL EEQLLRTSSD NWCIMNDGTK DPTIVMGISG  60
KPAELLELDL VLRDQIPVIR RFTGGGTVTV DHNTVFVTFI CNTDAVAGLQ PYPRPIMSWS  120
SLLYSRVFEG RGDFQLREND YVFGNRKFGG NAQSITKTRW IHHTSFLWDY EVRNMAYLRL  180
PKRIPEYRLA RDHLEFICCL KDYIPRSVFL DRTVDALRTQ FSVRSEQLDA FEATSNAKFV  240
PSTRLLTRQE LEEAAFGSHA ESTLSQSLSL MGRVKLKIKK LESSGNRQVT FSKRRNGILK  300
KAKELSILCD VDIVLLMFSP TGRPTLLQGE RSNVEEIISK FAQLTPQERA KRKLESLEAL  360
KKTFKKLDHD VNVQEFMSSS TQTVQDLTTQ VRVLQAQLTE IHKRLSFWCN PDKVDNLEHL  420
SQMEDMLKES INRTRLHKEN LGKHQLTSLN CTSQVLVFKY IRNFDPVIVQ GASSSKHKTQ  480
RSYSCIQCYR FDTSAADTWR AHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-80	M-type_MADS family protein