PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g523120.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 355aa    MW: 39573.4 Da    PI: 9.3124
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g523120.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.25.8e-20194242149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                       k++e+k +r+vtfskR+ g++ KA ELSvLC+ae a i++ss+gk++ +
  Pd.00g523120.m01 194 KKVEEKNKRHVTFSKRKRGLFNKAAELSVLCGAETAGIVVSSNGKVFCF 242
                       57899****************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MAKRGADESE ITNDDNINGK RQRTDPTMAK MGAAESEITN DNNINGKRQI TDPTMAKMGA  60
AESEITNDDN INGKRQITDP TSAKMGAAES EITNDNNING KRPRTDPTIV KMGAAESEIT  120
NDNNINGKRP RTDPTMAKRG AAEIEITNDN NINGKRPRTD PTTAKRGAAE IEITNENNIN  180
GKRPSKRQRR VEIKKVEEKN KRHVTFSKRK RGLFNKAAEL SVLCGAETAG IVVSSNGKVF  240
CFGSPSADTV IHRYLGHNAS SLLHAGQPDI HHVNGEVRYC PYNISSHVNI MRNGNKQVED  300
YMEARRHMEI EKIKRPIEMT TSLEEMEEYM AALRQLKHNV EVRTNQMVMN VGYNC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-19M-type_MADS family protein