PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g513340.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 833aa MW: 92271.9 Da PI: 8.6132

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g513340.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.8e-07	191	211	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +fa+ G C++G++CkF H Pd.00g513340.m01 191 YCTDFAK-GKCRRGSSCKFDHH 211 5****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence
MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPETNDMQ RSKHDLGLAS REPLPGSRGS 60 HKIESINKGS NRYMDDSMVW DGDGNCSTRM SPGLDEWRQH RSRSPKSGWS RSLRRESVFL 120 DRNRSRSGVS AQLCKDFTAG RCRRASDCQF LHEGSSNYDD SWESRHRKGG ASKYSPDTGD 180 YPLKSGRSSV YCTDFAKGKC RRGSSCKFDH HRASDGYSKG SMNERENERR KRDASTERGT 240 DRVPHRSGDI PCKFFAAGNC RNKKYCRFSH HIQARVSPER KSRDGRWGLS DAGPAWDGPK 300 WSDTVALSDA SKLTADNNGN ISVPELRPSA WSMDDNRWGH GLNNDNQKCA DPSVIHEAAQ 360 RNEKDTHLWK EDNVGAHVGP PKSRDTEKWL GDMSPDWNYT VQSSNHVGKE EHSGNALDSE 420 PSSQVHGAAS IMQPMIAERS NFLQNKDMRE DGAIPLPYDD RNPIEKNASS RNDLNVSANI 480 MPRQSFDNSG QSSSAFPFSG LSTVRQSQTL IPTHPQGGGI VKSPQDTLSS ESKSVIKLDI 540 GDAKTSLVTG ILQVPNVVGD KELVQLTNLS ASLAQFLGNH QQHSQYFAVL NSQNAPPPLA 600 KSEGSSEQLS AAAIQPDPVI SEKPYDPIHD SRELRNSNNP VFLLPNNAEN TSVDGKVDKP 660 SNVVSPSSFP SGANGNDYLQ AHNSVEPKQK NCHLSQVEPL AKSEIVKGNS EFGAQESKNV 720 KEESKSPDIG PLEGTEKDGA EEGKKSKEVK GSRAFKFALV EFVKDLLKPT WRDGQINKDA 780 YKTIVKKVVD KVTSTMQGAN IPQTQEKIDH YLSFSKPKLT KLVQAYVEKM QKG

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence

MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPETNDMQ RSKHDLGLAS REPLPGSRGS  60
HKIESINKGS NRYMDDSMVW DGDGNCSTRM SPGLDEWRQH RSRSPKSGWS RSLRRESVFL  120
DRNRSRSGVS AQLCKDFTAG RCRRASDCQF LHEGSSNYDD SWESRHRKGG ASKYSPDTGD  180
YPLKSGRSSV YCTDFAKGKC RRGSSCKFDH HRASDGYSKG SMNERENERR KRDASTERGT  240
DRVPHRSGDI PCKFFAAGNC RNKKYCRFSH HIQARVSPER KSRDGRWGLS DAGPAWDGPK  300
WSDTVALSDA SKLTADNNGN ISVPELRPSA WSMDDNRWGH GLNNDNQKCA DPSVIHEAAQ  360
RNEKDTHLWK EDNVGAHVGP PKSRDTEKWL GDMSPDWNYT VQSSNHVGKE EHSGNALDSE  420
PSSQVHGAAS IMQPMIAERS NFLQNKDMRE DGAIPLPYDD RNPIEKNASS RNDLNVSANI  480
MPRQSFDNSG QSSSAFPFSG LSTVRQSQTL IPTHPQGGGI VKSPQDTLSS ESKSVIKLDI  540
GDAKTSLVTG ILQVPNVVGD KELVQLTNLS ASLAQFLGNH QQHSQYFAVL NSQNAPPPLA  600
KSEGSSEQLS AAAIQPDPVI SEKPYDPIHD SRELRNSNNP VFLLPNNAEN TSVDGKVDKP  660
SNVVSPSSFP SGANGNDYLQ AHNSVEPKQK NCHLSQVEPL AKSEIVKGNS EFGAQESKNV  720
KEESKSPDIG PLEGTEKDGA EEGKKSKEVK GSRAFKFALV EFVKDLLKPT WRDGQINKDA  780
YKTIVKKVVD KVTSTMQGAN IPQTQEKIDH YLSFSKPKLT KLVQAYVEKM QKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-11	C3H family protein