PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g512230.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23664.9 Da PI: 8.7966 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.1 | 3.6e-44 | 63 | 161 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++e Pd.00g512230.m01 63 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKE 155 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Pd.00g512230.m01 156 LDATNA 161 *99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MPQRKLLLVD GINGDIMVYS KSPATSWYNH RRDLERVFSH NGEKAQLVHW RMASSSSSYT 60 NSPCAACKFL RRKCMPDCIF APYFPPEEPQ KFANVHKIFG ASNVSKLLNE VLPHQREDAV 120 NSLAYEAEAR MKDPVYGCVG AISVLQRQVI RLQKELDATN ADLIRYAASS CNNLEIPIAS 180 QSGRTRTNSN TGHGGGSLGQ NPGLVLSPLL SQSE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 3e-72 | LBD family protein |