PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g499770.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27024.8 Da    PI: 8.4706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g499770.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.65.9e-221962245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      +ie  sn qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k
  Pd.00g499770.m01 19 KIEKRSNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAKK 62
                      699*************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MVMKIKKPSQ GRQKIAIAKI EKRSNLQVTF SKRRSGLFKK ASELCTLCGV EIAIIVFSPA  60
KKPFSFGHPE VDSIVDRFVA RNPNPNPLGL EWSTDTTQQL AEAHRNSSVH ELNIQLTQIV  120
NQLEAEKIHG EALDKMSKAS QNQCWWEMPV DELGLHELQI LKASVEELKR NVNKQANRIL  180
MESSYPSAAA NYSSSPLSMM NNIGGLVQRD IDDHYRFESK NPTDQIEPAY NFGYAGHGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-56M-type_MADS family protein