PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g492620.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 433aa MW: 48234.2 Da PI: 8.6702

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g492620.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	58	102	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd+ll ++v+++ + +Wk Ia++++ gRt+ qc rwqk+l Pd.00g492620.m01 58 CWTEEEDDLLGELVRKFNSSNWKEIAACLP-GRTDVQCLQRWQKVL 102 6***************************.**********986 PP
2	Myb_DNA-binding	59.3	8.7e-19	108	154	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ v+ +G ++W+ Ia+ ++ gR +kqc++rw+++l Pd.00g492620.m01 108 KGPWTKEEDDCIIKQVESHGAKRWSVIAKFLP-GRMGKQCRERWYNHL 154 79****************************.***********97 PP
3	Myb_DNA-binding	47.4	4.4e-15	160	202	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT+eE+ l +++++G++ W+ Iar ++ gRt++ +k++w+ Pd.00g492620.m01 160 RNAWTEEEEWVLTYYHQLFGNK-WAEIARFLP-GRTDNAIKNHWN 202 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MAKVKKEQLQ EVVVDPYEKM GFLLQALYET EGCFDSPASK PSSATWRATG PMRRSAKCWT 60 EEEDDLLGEL VRKFNSSNWK EIAACLPGRT DVQCLQRWQK VLNPEIVKGP WTKEEDDCII 120 KQVESHGAKR WSVIAKFLPG RMGKQCRERW YNHLCPAINR NAWTEEEEWV LTYYHQLFGN 180 KWAEIARFLP GRTDNAIKNH WNCTLKRKLD SYSPNGCDVD MHPHVWNGEL RSGHVEINPA 240 GQISDRLASL NQRTGLEIGD SACSTELTLG CSYRHELCSE WKPVKVQKYR SSDRGANSLT 300 NLITSGSSKH SPLSASSSVF VGASASTRSS PLESPSCYST PQRRAQNVNV NLSSGSSGSS 360 PGSRLKNLAL SFKNTPSIIR KRSSRRPDAS SAAVKSLGRC LEREFDAEND SGVTKCGQLF 420 SAYATSSDVN VGA

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MAKVKKEQLQ EVVVDPYEKM GFLLQALYET EGCFDSPASK PSSATWRATG PMRRSAKCWT  60
EEEDDLLGEL VRKFNSSNWK EIAACLPGRT DVQCLQRWQK VLNPEIVKGP WTKEEDDCII  120
KQVESHGAKR WSVIAKFLPG RMGKQCRERW YNHLCPAINR NAWTEEEEWV LTYYHQLFGN  180
KWAEIARFLP GRTDNAIKNH WNCTLKRKLD SYSPNGCDVD MHPHVWNGEL RSGHVEINPA  240
GQISDRLASL NQRTGLEIGD SACSTELTLG CSYRHELCSE WKPVKVQKYR SSDRGANSLT  300
NLITSGSSKH SPLSASSSVF VGASASTRSS PLESPSCYST PQRRAQNVNV NLSSGSSGSS  360
PGSRLKNLAL SFKNTPSIIR KRSSRRPDAS SAAVKSLGRC LEREFDAEND SGVTKCGQLF  420
SAYATSSDVN VGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-75	MYB family protein