PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g490600.m02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 487aa MW: 51435.4 Da PI: 8.5334 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.4e-11 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++++rtG+C yG+rC+++H++ Pd.00g490600.m02 49 ETDCSYYLRTGICGYGSRCRYNHPR 73 568********************96 PP | |||||||
2 | zf-CCCH | 39.5 | 9.6e-13 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Pd.00g490600.m02 95 QPVCQYYMRTGTCKFGASCKYHHPK 119 689********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 9.9e-12 | 140 | 165 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ Pd.00g490600.m02 140 GERECSYYVKTGQCKFGATCKFHHPQ 165 789*********************97 PP | |||||||
4 | zf-CCCH | 38.9 | 1.5e-12 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p Pd.00g490600.m02 302 PGQPECQYYMRTGDCKFGSSCRYHHPP 328 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.5 | 6.9e-11 | 359 | 382 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Pd.00g490600.m02 359 PLCTHYAQRGVCKFGPACKFDHPM 382 89********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence |
MERYGRTTEG SQSDPSPEWT VPGPETGLEE SMWQLGLGPG ESYPERPNET DCSYYLRTGI 60 CGYGSRCRYN HPRDRSAVTG ATRPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ 120 GGSSSSPVSL NYYGYPLRQG ERECSYYVKT GQCKFGATCK FHHPQPAGIP LPVPSPAPQV 180 SPVPAAPLYQ TVQSPSVSSQ QYGVVFARPP LLPGSYVQSP YGQVLLSPGT IPFPGWSPYQ 240 APASALPSPS TQPGVGSGTL YGMSQLSPSA AAYTGMYQPI PLPSSLGLPT TSQKEHLFPE 300 RPGQPECQYY MRTGDCKFGS SCRYHHPPEV VGPKTTVALS PSGLPSRPVS RPYKSHGAPL 360 CTHYAQRGVC KFGPACKFDH PMGTLSYSPS ASSLADMPVA PYPVGSSIGT LAPSSSSSST 420 ELRPELNSGS GKDLVSARMS SSLSTSSGSV GSTVSKGGIT HLGIQQSAQG SGPSTSSGSS 480 TESHSPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-148 | C3H family protein |