PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g486120.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 274aa    MW: 30878.2 Da    PI: 6.0629
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g486120.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12138163126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  Pd.00g486120.m01 138 YQPDICKDYKETGYCGYGDSCKFMHD 163
                       67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MADSGGSAEP GEVCNFFRKP LKKQNIRKRR VDEDEEDDDS KSGGKSLPSQ RKASKLDGKL  60
YFSSGPAKSS TPDSSAIFEF KSSKEIQVEH DSRATATLET ETDFSRDARA VLASEKAGGS  120
HGPLRASAHI RATTRFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQMEREWDEA  180
EKIRKRNLAL GEDDVDQTDE DDEDDEDGSL PFACFICRQP FVDPVVTKCN HYFCEHCALK  240
HHSKNKKCFV CEKPTLGIFN TAHEIRKRMA AEGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-128C3H family protein