PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g474080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 443aa MW: 50743.7 Da PI: 10.5648

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g474080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.8	7.8e-20	1	69	17	87
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r+++ k+plW+evs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdqlea Pd.00g474080.m01 1 MDVAFRDASVKGPLWDEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLEA 69 5678999********************************************975544..6*****85 PP
2	trihelix	105.5	3.8e-33	291	375	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+ Pd.00g474080.m01 291 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLD 375 8******************************************************************97.99********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MDVAFRDASV KGPLWDEVSR KLAALGYHRS AKKCKEKFEN VYKYHRRTKE GRTGKSEGKT 60 YRFFDQLEAL ENQPQTPGTT HHHQAKPHHQ STMAAVAATM ATMASTIPSS AAPHPIISNV 120 SSQAIAAPTL NLAAPNSFPP TNPIRLMKEV IQKQEDLQKR FLEAIEKREH EKMVREEAWR 180 MQEMARVNRE REILAQERSI AAAKDAAVMS FLQKIFEQQQ NPNQTPPPGQ SQINNNLLQL 240 QPTQLVPPPP RQPAPPPQPQ PQQPVTNFDL VPKPNNNGEN NNLSSPASSS RWPKVEVQAL 300 IKLRTSLDSK YQENGPKGPL WEEISGAMRK LGYNRSSKRC KEKWENINKY FKKVKESNKR 360 RPEDSKTCPY FHQLDSLYRE RNKFDHNNVN PKPENSVPLM WQTSQLQWVQ PQLSELRKRP 420 RWIERKKVGL NVGQVLQGFR TGA

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MDVAFRDASV KGPLWDEVSR KLAALGYHRS AKKCKEKFEN VYKYHRRTKE GRTGKSEGKT  60
YRFFDQLEAL ENQPQTPGTT HHHQAKPHHQ STMAAVAATM ATMASTIPSS AAPHPIISNV  120
SSQAIAAPTL NLAAPNSFPP TNPIRLMKEV IQKQEDLQKR FLEAIEKREH EKMVREEAWR  180
MQEMARVNRE REILAQERSI AAAKDAAVMS FLQKIFEQQQ NPNQTPPPGQ SQINNNLLQL  240
QPTQLVPPPP RQPAPPPQPQ PQQPVTNFDL VPKPNNNGEN NNLSSPASSS RWPKVEVQAL  300
IKLRTSLDSK YQENGPKGPL WEEISGAMRK LGYNRSSKRC KEKWENINKY FKKVKESNKR  360
RPEDSKTCPY FHQLDSLYRE RNKFDHNNVN PKPENSVPLM WQTSQLQWVQ PQLSELRKRP  420
RWIERKKVGL NVGQVLQGFR TGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-61	Trihelix family protein