PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g469450.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 748aa MW: 81056.5 Da PI: 8.8468

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g469450.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70	3e-22	416	461	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d epgrCrRtDGKkWRC ++v++++k+C+ H+hrgr+rsrk++e+s Pd.00g469450.m02 416 DHEPGRCRRTDGKKWRCNKNVVPDQKYCQQHMHRGRQRSRKPVENS 461 679***************************************9985 PP
2	WRC	66.2	4.6e-21	628	669	2	43
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC+r+vl+++k+C H+hrg +r+ k + Pd.00g469450.m02 628 LEPGRCRRTDGKKWRCRRDVLPDQKYCGQHIHRGAKRQMKDF 669 59************************************9976 PP
3	QLQ	54.7	3.1e-19	351	385	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Ta+Ql++L++Q+l+yK++aan+PvP +L+++++k Pd.00g469450.m02 351 LTATQLHELEQQALIYKHFAANLPVPFHLVLPVWK 385 7********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MSLPCVKQTD VITCKVAVAW GAGKPLVIEE VNVNPPQAME MRIKVVCTSL CRSDITAWES 60 QDFGMSISKT EVNLRRLLAA APQQQNQSKL VHYVATLREQ VEQLAEERTP EGLPRVSKAV 120 LSDYSEKIEA IASKLAAPPP DIQAPKEPLA RISVKANSSD TGDNQIPPSP GLRRRFGLTS 180 NSEDGTREIL NVDSSAPVKL DAAAQAHIEK HRKLQEDLTD EMVGLARQLK ESSLMMNHSL 240 QDTEKILDST EKAVESSLAS TGHATTRATN IYSKTSKTTC FTWLVIQIEL GFLSAPLLKQ 300 QFDLLVMTME EEGGGKVKLG LGIGVDCYGD DHNGTEEVVG KKKKKYGGGG LTATQLHELE 360 QQALIYKHFA ANLPVPFHLV LPVWKSVAAS FGSSNAAAIN RQYPSWFSAT GFDYRDHEPG 420 RCRRTDGKKW RCNKNVVPDQ KYCQQHMHRG RQRSRKPVEN SEVASPSSTK TPKNSEGELG 480 NSKTNLQIST PKGLQLMAQS YNYVSVSQGT TMASSGCHEC KKNIRPVTTT SIANIPANRS 540 ASTNPAAVAT TTIAGPTTAT NSSTNENSLN IGVKYSSSNH AGGNCMIRGS SMNVVNISPG 600 LGFSPKSVLQ ALLGCNGSYF DNRSGVELEP GRCRRTDGKK WRCRRDVLPD QKYCGQHIHR 660 GAKRQMKDFQ PVAVPSSSAA AMNTAQLSQT TAICRKTNCA IPNTNLSISI PANPPLARND 720 EGSNSSSDSD TTLTDTSLTA CDSSYVSA

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MSLPCVKQTD VITCKVAVAW GAGKPLVIEE VNVNPPQAME MRIKVVCTSL CRSDITAWES  60
QDFGMSISKT EVNLRRLLAA APQQQNQSKL VHYVATLREQ VEQLAEERTP EGLPRVSKAV  120
LSDYSEKIEA IASKLAAPPP DIQAPKEPLA RISVKANSSD TGDNQIPPSP GLRRRFGLTS  180
NSEDGTREIL NVDSSAPVKL DAAAQAHIEK HRKLQEDLTD EMVGLARQLK ESSLMMNHSL  240
QDTEKILDST EKAVESSLAS TGHATTRATN IYSKTSKTTC FTWLVIQIEL GFLSAPLLKQ  300
QFDLLVMTME EEGGGKVKLG LGIGVDCYGD DHNGTEEVVG KKKKKYGGGG LTATQLHELE  360
QQALIYKHFA ANLPVPFHLV LPVWKSVAAS FGSSNAAAIN RQYPSWFSAT GFDYRDHEPG  420
RCRRTDGKKW RCNKNVVPDQ KYCQQHMHRG RQRSRKPVEN SEVASPSSTK TPKNSEGELG  480
NSKTNLQIST PKGLQLMAQS YNYVSVSQGT TMASSGCHEC KKNIRPVTTT SIANIPANRS  540
ASTNPAAVAT TTIAGPTTAT NSSTNENSLN IGVKYSSSNH AGGNCMIRGS SMNVVNISPG  600
LGFSPKSVLQ ALLGCNGSYF DNRSGVELEP GRCRRTDGKK WRCRRDVLPD QKYCGQHIHR  660
GAKRQMKDFQ PVAVPSSSAA AMNTAQLSQT TAICRKTNCA IPNTNLSISI PANPPLARND  720
EGSNSSSDSD TTLTDTSLTA CDSSYVSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-29	GRF family protein