PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g467370.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 611aa MW: 66048.2 Da PI: 7.3739

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g467370.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.6e-24	237	281	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Pd.00g467370.m02 237 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 281 79****************************************985 PP
2	QLQ	58.3	2.3e-20	169	205	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +++k Pd.00g467370.m02 169 GPFTPSQWIELEHQALIYKYMTSNVPVPSNLLIPLKK 205 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MDFGVMALEG LVGPEGGATG AAHSLASDPE TKPKGHAPNV PHGSGSVKQQ RSWPAEDDWR 60 TSKMPKNDDL PAPKTMPLQY QGTLLLRSNS LLPADTHRQE QMLSFSNNKS EVTFLSKDGM 120 LERNIQGPDF SYYQRTPALT PSAYTRNAAA YGSGSINPSM HGPFAGVRGP FTPSQWIELE 180 HQALIYKYMT SNVPVPSNLL IPLKKSLYPY GLSGSTGNLA PNSSWGSYHL GFSGNTDPEP 240 GRCRRTDGKK WRCSRDAVAD QKYCERHINR GRHRSRKPVE GQPGQAASGT SNSKGVPMTS 300 STSTPVMPSS GTSNNVATMQ NQFKSLQPAG AANPSADAFV NRMQDPRGLS VMSASTIKPK 360 ASDSRFNMPK QEIPLEESSQ SEFGLVSTDS LLNPSHRNSY ISKDFGGSFL DFSDQEAQDQ 420 HPLRQFIDDW PKDQSSHSVS TWPDEIKSDW TQLSMSIPMT SSEFSSSSSS PTQEKRALSP 480 LRLSREFEPA QMNLGVSNEL SESSQKTNWI PIPWGNSMGG PLGEVLTNTT SSGKMCNNSV 540 SPLNLLNEGW DGSPQLGSSP TGVLQKSTFC SLSNSSSGSS PRGENKKNLD GASIYDDVLG 600 STFASSSVPS L

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MDFGVMALEG LVGPEGGATG AAHSLASDPE TKPKGHAPNV PHGSGSVKQQ RSWPAEDDWR  60
TSKMPKNDDL PAPKTMPLQY QGTLLLRSNS LLPADTHRQE QMLSFSNNKS EVTFLSKDGM  120
LERNIQGPDF SYYQRTPALT PSAYTRNAAA YGSGSINPSM HGPFAGVRGP FTPSQWIELE  180
HQALIYKYMT SNVPVPSNLL IPLKKSLYPY GLSGSTGNLA PNSSWGSYHL GFSGNTDPEP  240
GRCRRTDGKK WRCSRDAVAD QKYCERHINR GRHRSRKPVE GQPGQAASGT SNSKGVPMTS  300
STSTPVMPSS GTSNNVATMQ NQFKSLQPAG AANPSADAFV NRMQDPRGLS VMSASTIKPK  360
ASDSRFNMPK QEIPLEESSQ SEFGLVSTDS LLNPSHRNSY ISKDFGGSFL DFSDQEAQDQ  420
HPLRQFIDDW PKDQSSHSVS TWPDEIKSDW TQLSMSIPMT SSEFSSSSSS PTQEKRALSP  480
LRLSREFEPA QMNLGVSNEL SESSQKTNWI PIPWGNSMGG PLGEVLTNTT SSGKMCNNSV  540
SPLNLLNEGW DGSPQLGSSP TGVLQKSTFC SLSNSSSGSS PRGENKKNLD GASIYDDVLG  600
STFASSSVPS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-104	GRF family protein