PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g453330.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 345aa MW: 38422 Da PI: 9.3251 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.3 | 5.5e-20 | 194 | 242 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k++e+k +r+vtfskR+ g++ KA ELSvLC+ae a i++ss+gk++ + Pd.00g453330.m01 194 KKVEEKNKRHVTFSKRKRGLFNKAAELSVLCGAETAGIVVSSNGKVFCF 242 57899****************************************9877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence |
MAKRGADESE ITNDDNINGK RQRTDPTMAK MGAAESEITN DNNINGKRQI TDPTMAKMGA 60 AESEITNDDN INGKRQITDP TSAKMGAAES EITNDNNING KRPRTDPTIV KMGAAESEIT 120 NDNNINGKRP RTDPTMAKRG AAEIEITNDN NINGKRPRTD PTTAKRGAAE IEITNENNIN 180 GKRPSKRQRR VEIKKVEEKN KRHVTFSKRK RGLFNKAAEL SVLCGAETAG IVVSSNGKVF 240 CFGSPSADTV IHRYLGHNAS SLLHAGQPDI HHVNGEVRYC PYNISSHVNI MRNERGGWRY 300 GWWEKPIEMT TSLEEMEEYM AALRQLKHNV EVRTNQMVMN VGYNC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 3e-20 | M-type_MADS family protein |