PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g451270.m01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 337aa    MW: 37952.4 Da    PI: 7.9266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g451270.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.6e-1079103126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykt+lC +f   G C+ G++C++aHg
  Pd.00g451270.m01  79 YKTRLCVNFKT-GMCRNGENCNYAHG 103
                       9**********.*************8 PP

2zf-CCCH28.42.8e-09142164325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       ++lC+ f+ + +C+yGdrC+F H
  Pd.00g451270.m01 142 MKLCKKFYNGEECPYGDRCNFLH 164
                       689******66************ PP

3zf-CCCH42.31.3e-13223249127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC+ +  tG C++G++C+FaHg+
  Pd.00g451270.m01 223 WKTKLCNKWETTGKCPFGEKCHFAHGQ 249
                       8************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MRSQTPYAGG SDAVNCWPPF PTSMNNEDQH SQFEQQPSPF KRPRNSEENQ SNPMPYPPTN  60
ARMQPPNAPV NKGASNIFYK TRLCVNFKTG MCRNGENCNY AHGIEDIRHP PPNWQELVSV  120
REEDRPPLSG NWDDDQKIIH RMKLCKKFYN GEECPYGDRC NFLHEDPAKF RDDISRFREN  180
TAISIGTTGP SVVHGSGSNH SEENRLVNTG MDTFRVNMKP VYWKTKLCNK WETTGKCPFG  240
EKCHFAHGQA ELQVPSGRVE AEVLSSTPIS TKPQAGPVND SSTTAMAILP ASNEEGGQGK  300
KRVLKWKGSK KINRIYADWL DDVPLVHQQN LSSTVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-94C3H family protein