PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g451230.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 485aa    MW: 54515.9 Da    PI: 6.4054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g451230.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-0786107426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C f++  G+C+ GdrC+F H+
  Pd.00g451230.m01  86 VPCYFYFN-GFCNKGDRCSFLHD 107
                       68******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MDEDLLKRNT DCVYFLASPL TCKKGVDCEF RHSKIARLNP KDCWYWLSGN CLNPTCAFRH  60
PPLDGHGGAP SSESAPSSVS ANKTIVPCYF YFNGFCNKGD RCSFLHDTEG GASTEKSPKT  120
ASACNETFAL SSENKASAGN DMMPAPRMAH LNPSETASME TVDTGFQPKE DLNYFDQSAQ  180
TEVPQQSISP QISVSGDEEA TEIRSDSLPA DGSVHSKSHS CTDQSSDDLV QEEWWESSPG  240
FDVLVDGKSE NLGCEDDPEC FLTLDGERRE LNSHFLGYDF ENPDDYVPVC PPDAELLYER  300
DVYDSYDFLD NKHMLGNEGK FPGYAKETMS DAIYSRKRKL MPMELAVYDQ DFLDVRDRLR  360
RRRMTDCHSI TGLSRRHEAL RLFGRSREMP RRHGMGWRVH GRLASEVRNS TYGSLRENGA  420
SSSAGIQRVS LRHSQQFRPR KHHKERKLAK QKLPSSGVSK KRVVCMIGIA CVNAFNLYKA  480
MLLTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357363DRLRRRR