PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g449560.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 348aa MW: 39460.7 Da PI: 8.5162 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.5e-16 | 37 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa+a++ a++k++g Pd.00g449560.m01 37 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAARAYDLAALKYWG 96 57*******************999955656446*************************98 PP | |||||||
2 | AP2 | 51.3 | 2.9e-16 | 139 | 190 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Pd.00g449560.m01 139 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 190 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence |
MERKCYQFSQ HPKEQVRTRV KRTRKSVRRD SPPQRSSIYR GVTRHRWTGR YEAHLWDKNC 60 WNESQNKKGR QVYLGAYDDE EAAARAYDLA ALKYWGQDTI LNFPLDTYPE ELKEMESQSK 120 EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA 180 YDMAAIEYRG LNAVTNFDLS RYIKSLCPNN QNVPNNPQPK PNGDLSPTQN PNSKLGLGFI 240 PNYHSSSSSA SESTVALPRP GNGASASSAL GLLLQSSKFK EMLERTSTSS TDCSSTLSEP 300 DIPRRSFPDD IQTYFDCQDL NSYAEGDDII FGDLHSFGSP VFHCELDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 5e-87 | AP2 family protein |