PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g439960.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 767aa MW: 81178.6 Da PI: 8.1234

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g439960.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	5e-08	242	266	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C+f++r+ C +G +C+F+H+ Pd.00g439960.m01 242 GKKDCSFYMRNASCMFGTNCRFNHP 266 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence
MLPSARLLLP AAAAPVLYRF YKYLRTELIR VPQNPPELSD LDLAILEEIR KLGPAFLDKI 60 LKDPTLLDEF RKIDPAVLHE FRKLDPAIIG KILQFCLKDN KEGEEEEDRS TCSGRETAKQ 120 NENGNEETDG GGGENKNENG GEVEKKVVDE ERSRSQHYPV RPGAGEGKTA RKNRKNNQVS 180 KDKMKEREGL AAEKPGQTEC KDYSRSGGRK YEKACSLNPG RGEPSVAPIL ECNFLGLPIR 240 PGKKDCSFYM RNASCMFGTN CRFNHPDPTA ARESEPPSGY GNGGSASLQG ASSSTAAPWS 300 APRSLNDAPL YVPMVIPHVQ IGSWGNADGV WAQSEAGNKD EASGWTKPAF INENQNDSWK 360 KPSGVDDNKR ASWGKADGGS TWTKQDGDAT WNKQGEGSTW NKQDGSSAWN KPAGDSSWSK 420 QAGGSSWGKQ ADVTAGHESG GVGNQDIGWK RASSFGGSQS IDGVNGDQPE DFNNNRSGGN 480 WRGGSGRGNS DRGGFRGGRG FVDKGGFGGR GYGGRGCGRY QSGGWSNRNE SIDNNSSGWS 540 KGADGAGEGW KKDNGGGSWN QGGGSKNDWQ GRNSSGWSSL SSGWNQYDVT KGIGGSGSGW 600 NQTVEAKYTA GTQDKGTGSH NEVGRSWGNN WKSSDASNGD QSSRWKQSTA AEEVKGNTDQ 660 DGGWNKGPSS NAQAGGWGNQ GSGWNKGTGS VFGGGTGEHP SAAVGGQSSD WKQSSAAGGA 720 QSSSWNQSGE AKQGTDEGAK PTISWGKAAA ASSWGKGSDG GSSKGGW

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence

MLPSARLLLP AAAAPVLYRF YKYLRTELIR VPQNPPELSD LDLAILEEIR KLGPAFLDKI  60
LKDPTLLDEF RKIDPAVLHE FRKLDPAIIG KILQFCLKDN KEGEEEEDRS TCSGRETAKQ  120
NENGNEETDG GGGENKNENG GEVEKKVVDE ERSRSQHYPV RPGAGEGKTA RKNRKNNQVS  180
KDKMKEREGL AAEKPGQTEC KDYSRSGGRK YEKACSLNPG RGEPSVAPIL ECNFLGLPIR  240
PGKKDCSFYM RNASCMFGTN CRFNHPDPTA ARESEPPSGY GNGGSASLQG ASSSTAAPWS  300
APRSLNDAPL YVPMVIPHVQ IGSWGNADGV WAQSEAGNKD EASGWTKPAF INENQNDSWK  360
KPSGVDDNKR ASWGKADGGS TWTKQDGDAT WNKQGEGSTW NKQDGSSAWN KPAGDSSWSK  420
QAGGSSWGKQ ADVTAGHESG GVGNQDIGWK RASSFGGSQS IDGVNGDQPE DFNNNRSGGN  480
WRGGSGRGNS DRGGFRGGRG FVDKGGFGGR GYGGRGCGRY QSGGWSNRNE SIDNNSSGWS  540
KGADGAGEGW KKDNGGGSWN QGGGSKNDWQ GRNSSGWSSL SSGWNQYDVT KGIGGSGSGW  600
NQTVEAKYTA GTQDKGTGSH NEVGRSWGNN WKSSDASNGD QSSRWKQSTA AEEVKGNTDQ  660
DGGWNKGPSS NAQAGGWGNQ GSGWNKGTGS VFGGGTGEHP SAAVGGQSSD WKQSSAAGGA  720
QSSSWNQSGE AKQGTDEGAK PTISWGKAAA ASSWGKGSDG GSSKGGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-26	C3H family protein