PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g438390.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 482aa MW: 55487.9 Da PI: 6.7787

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g438390.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.3	3.9e-41	194	293	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq++l++l+a+ Pd.00g438390.m01 194 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKHLSELQAQ 286 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e Pd.00g438390.m01 287 LAKTQAE 293 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MQIHSCFSLF RWSAEFGAPR IGAPEIHVML ANYIYFESPE VDMVRVSHHF VRGNNPKEFA 60 STLVNFMGKC YPGEDDLAIA RAILMYLSLG NLRDANNLMD EIKKQVESKQ LDFPQSDLIQ 120 FINFLLQTLL RDALPLFNML RAKYKSSLDR EPTFHELLDE IAEKFYGVRR RNPLQGMGMF 180 GEIFKVELNS CECPCAACKI LRRRCAEKCV LAPYFPPTEP LKFTIAHRVF GASNIIKLLQ 240 ELPESHRADA VSSMVYEANA RIRDPVYGCA GAICQLQKHL SELQAQLAKT QAELLNMQCQ 300 QGNLIALISR KLEKMSGAGK KVADVAFKAS RKIDWEGMAK LLVSDEARKE FASLRRAFDE 360 VNTTLQTKFS QEPEPIDWEY YRKGIGSRLV DMYKEAYDSV QVPKYVDTVT PEYKPKFDQL 420 LVDLKEAEEK SLKESERLEK EIAEVQELKK KISTMTADEY FEKHPELKKK FDDEIRNDYW 480 GY

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MQIHSCFSLF RWSAEFGAPR IGAPEIHVML ANYIYFESPE VDMVRVSHHF VRGNNPKEFA  60
STLVNFMGKC YPGEDDLAIA RAILMYLSLG NLRDANNLMD EIKKQVESKQ LDFPQSDLIQ  120
FINFLLQTLL RDALPLFNML RAKYKSSLDR EPTFHELLDE IAEKFYGVRR RNPLQGMGMF  180
GEIFKVELNS CECPCAACKI LRRRCAEKCV LAPYFPPTEP LKFTIAHRVF GASNIIKLLQ  240
ELPESHRADA VSSMVYEANA RIRDPVYGCA GAICQLQKHL SELQAQLAKT QAELLNMQCQ  300
QGNLIALISR KLEKMSGAGK KVADVAFKAS RKIDWEGMAK LLVSDEARKE FASLRRAFDE  360
VNTTLQTKFS QEPEPIDWEY YRKGIGSRLV DMYKEAYDSV QVPKYVDTVT PEYKPKFDQL  420
LVDLKEAEEK SLKESERLEK EIAEVQELKK KISTMTADEY FEKHPELKKK FDDEIRNDYW  480
GY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-63	LBD family protein