PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g434580.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 302aa MW: 31998.1 Da PI: 9.6537 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.8e-08 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ Pd.00g434580.m01 105 KTRLCNKYNTVEGCKFGDKCHFAHGE 130 8*********99************96 PP | |||||||
2 | zf-CCCH | 36.2 | 1e-11 | 269 | 294 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC ++ + GtC +GdrC+FaHgp Pd.00g434580.m01 269 FKTKLCENYTK-GTCTFGDRCHFAHGP 294 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence |
MDFGGGRKRG RPEAASFNGN GGFKKSKPEM ESFTTGIGSK SKPCTKFFST SGCPFGEGCH 60 FLHYVPGGIK AVSQMTGSNP TLPPPPRNSA APPSFPDGSS PPSVKTRLCN KYNTVEGCKF 120 GDKCHFAHGE WELGRPTAQS YEDPRGGGGY PGRMGGGRME PPPQTHGAAA RFGATATAKI 180 SVDASLAGAI IGKNGVNSKQ ICRVTGAKLS IREHESDPKL RNIELEGTFD QIKDASAMVR 240 ELIVNVSSAA GPHMRNNPGM AASAPASNFK TKLCENYTKG TCTFGDRCHF AHGPEELRRQ 300 GM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-52 | C3H family protein |