PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g427420.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 752aa MW: 84575.2 Da PI: 7.1922 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 114.8 | 4.7e-36 | 137 | 212 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv++C+ad++e+k yhrrh+vC ++++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k Pd.00g427420.m01 137 RCQVPSCRADIKELKGYHRRHRVCLACANASTVFLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRK 212 6************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence |
MEGPASPSST QSQQQRLDEA RFSEMEIQPP LPNQDTSTVW DWGDLLDFTV DDDLSISWGS 60 AEIDPAPALE DLPEDPNSNS GRVRKRDPRL ACTNFLAGHV PCACPEIDER MMELEEEEAG 120 HGKKRVKTAR APPGTARCQV PSCRADIKEL KGYHRRHRVC LACANASTVF LDGETKRYCQ 180 QCGKFHVLSD FDEGKRSCRR KLERHNNRRR RKPINSKGGI RKESQREIQI EDTNCDGGAG 240 EDSIQLSSQL NDKEELPESE GGRISTLSSV PDSQIVHSDG GASLVASGET QMDGRKHDSN 300 NSLSPPNCDK SAYSSMCPTG RISFKLYDWN PAEFPRRLRH QIFQWLASMP VELEGYIRPG 360 CIILTVFIAM PKFMWMKLLE DPVSYIHDFV VVPGRMLSGR GNILVYLNDM IFRVVKDGTS 420 VIKGKVEMRA PRLHYVHPRY FEAGKPMEFV ACGSDLLQPK FRFLVSFSGK YLAYNYYPES 480 SPSQIEGDTA TNLDHQLYKI RVPQTEANRF GPAFIEIENE SGLSNFLPIL IADKEIMTAS 540 QIQRFNYLLN FLISIKSTTI LEKVSQNLKT LMDNMELHSA NDGTSDADMR LLKNYMDYAH 600 DRQKIDNSGV LVPRSGRLVQ KEDIVSQSQS CFQNVGNLVV PLQCQDTEIT VDGRVDVMVG 660 STSHERSETV PLLSKKAVMK ANLIKKWPRV ANFCTSGEVS RSRSSGAFLR FRPVLYVICA 720 AAICLGFCAV LFHPHKVGEF AVTIRRCLFD NF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 211 | RRKLERHNNRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 0.0 | SBP family protein |