PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g418800.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | ARF | ||||||||
Protein Properties | Length: 643aa MW: 71246.5 Da PI: 7.5555 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + Pd.00g418800.m01 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEAWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFF--R 200 89****************************986445444..8999*********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+v+++r+ Pd.00g418800.m01 201 AESGDLCVGIRRA 213 489999****997 PP | |||||||
2 | Auxin_resp | 113.6 | 1.8e-37 | 251 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk+ +v++a++++++ GmRfkm fetedss++++ +Gt++ v+ +dp+rWp+S+Wr+L+ Pd.00g418800.m01 251 AATLAASGQPFEVVYYPRASTPEFCVKATSVRAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISYVQVADPSRWPESPWRLLQ 334 68899*****************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence |
MNNNSEKWLL DSKFWHACAG GMVQMPHINS KVFYFPQGHA ECAHGKVDFG NSRIPPLILS 60 RISAIRYMAD HETDEVYAKM KLIPIRENAF DLEDGFVENN GTVENPEKPT SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILAKDVHGE AWKFRHIYRG TPRRHLLTTG 180 WSNFVNQKKL VAGDSIVFFR AESGDLCVGI RRAKRGIGGG PEYPSGWNPA SARNSSGEWR 240 GKIRAESVIE AATLAASGQP FEVVYYPRAS TPEFCVKATS VRAAMQIQWC SGMRFKMPFE 300 TEDSSRISWF MGTISYVQVA DPSRWPESPW RLLQVSWDEP DLLQNVKRVS PWLVELVSSI 360 PAIHLSPFSP PRKKLRLQHN PDYSLVSQLP MPSVCSNFLN SSNPLCSVSD KISAGIQGAR 420 QAQFGLSSSD VFFNKLHSGM FPVGFQKLGH FAPSGIPEGN FMHMAESNEN ITCCLTKGIP 480 SQSLKGNGEI KTPHIFLFGQ LILTEQQMSK SSSGDCSSSD GHLEKKGNCS DASGSGSVLH 540 RNGSVENSSD EGSPWNKDHQ KRNVSLETSY CKVFIESGDV GTLDLSVLGS YKELYGKLAD 600 MFGLENSEML RNVLYGDAKG AIKHTEDEPF SEFLKTARRL YMG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |