PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g417510.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 683aa MW: 72170.6 Da PI: 9.7035

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g417510.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.4e-08	130	154	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C+f++r+ C +G +C+F+H+ Pd.00g417510.m01 130 GKKDCSFYMRNASCMFGTNCRFNHP 154 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MLKGPIGLPN PDVLPNAELS DLDLAILEEI RKLDARLDKI RKLNPALLDK IRKFDPDVHD 60 ELYNNQVSKD KMKEREGLAA EKPGQTECKD YSRSRERKYE KACSLNPGRG EPSVAPILEC 120 NFLGLPIRPG KKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESDPPSGYGN GGSASLQSAS 180 SSTAATWSAP RSLNDAPLYV PMVILHVQTG SWGNADGVWA QSEAGNKDEA SGWTKPAFIN 240 ENQNDSWKKP SGADDNKRAS WGKADGGSTW TKQDGDATWN KQGEGSTWNK QDGSSAWNKP 300 AGDSSWSKQA GRSSWGKQAD VTAGHESGGV GNQDNGWKRA SSFGGSQSID GVNGDQPEDF 360 NNNWRGGSGR GNSDRGGFRG GRGFVGRGGD REEVRGGFGR RWGFGGRGGD RGSFGGRGRS 420 YKGGFGGRGY GGRGRGRYQS GGWRNESIDN NSSGWSKGAD GGGEGWKKDN GGGCWNQGGG 480 NKNDWQGRNS RGWSSRSSGW NQYDVTKGIG GSGSGWNQTV EAKHSAGTQD KGTGSHNEVG 540 RSWGNNWKSS DAFNGDQSSR WKQSTAAKEV KGTTDQDGGW NKGPSSNAQA GGWGNQGSGW 600 NKGTGSGFGG GTGEQPSAAV GGQSSDWKQS SAASGAQSSI WNQSGEAKQG TDEGAKPTNS 660 WGKAAAASSW GKGTDGGSSK GGW

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MLKGPIGLPN PDVLPNAELS DLDLAILEEI RKLDARLDKI RKLNPALLDK IRKFDPDVHD  60
ELYNNQVSKD KMKEREGLAA EKPGQTECKD YSRSRERKYE KACSLNPGRG EPSVAPILEC  120
NFLGLPIRPG KKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESDPPSGYGN GGSASLQSAS  180
SSTAATWSAP RSLNDAPLYV PMVILHVQTG SWGNADGVWA QSEAGNKDEA SGWTKPAFIN  240
ENQNDSWKKP SGADDNKRAS WGKADGGSTW TKQDGDATWN KQGEGSTWNK QDGSSAWNKP  300
AGDSSWSKQA GRSSWGKQAD VTAGHESGGV GNQDNGWKRA SSFGGSQSID GVNGDQPEDF  360
NNNWRGGSGR GNSDRGGFRG GRGFVGRGGD REEVRGGFGR RWGFGGRGGD RGSFGGRGRS  420
YKGGFGGRGY GGRGRGRYQS GGWRNESIDN NSSGWSKGAD GGGEGWKKDN GGGCWNQGGG  480
NKNDWQGRNS RGWSSRSSGW NQYDVTKGIG GSGSGWNQTV EAKHSAGTQD KGTGSHNEVG  540
RSWGNNWKSS DAFNGDQSSR WKQSTAAKEV KGTTDQDGGW NKGPSSNAQA GGWGNQGSGW  600
NKGTGSGFGG GTGEQPSAAV GGQSSDWKQS SAASGAQSSI WNQSGEAKQG TDEGAKPTNS  660
WGKAAAASSW GKGTDGGSSK GGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-24	C3H family protein