PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g416730.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 165aa MW: 18908.8 Da PI: 10.6318

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g416730.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.8	6.6e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrngilKKA+ELSvLCdaeva+ii+s++gk+y ++s Pd.00g416730.m01 9 KRIENPTSRQVTFSKRRNGILKKAFELSVLCDAEVALIILSPSGKIYQFAS 59 79***********************************************86 PP
2	K-box	52.3	2.5e-18	93	163	17	87
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 ++e + L++ i+nL+ +++l Ge+L+ L ++eL+qLe+qL++++++iRs+ +++ ++i+ l+kk + Pd.00g416730.m01 93 TNNENEELRRSIDNLEMRLKNLAGEELDMLGMQELKQLERQLKTGVERIRSQIGRVVSDNISSLKKKVIII 163 678999*************************************************************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence
MGRGKVELKR IENPTSRQVT FSKRRNGILK KAFELSVLCD AEVALIILSP SGKIYQFASH 60 DINRTIAMYR NQVSLPESNN SSFRQARTME FGTNNENEEL RRSIDNLEMR LKNLAGEELD 120 MLGMQELKQL ERQLKTGVER IRSQIGRVVS DNISSLKKKV IIIKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	4e-42	MIKC_MADS family protein